Browse Element(s) Details


OsAffx.2640.1.S1_at

Description tigr:9630.m01527
TID=OsAffx.2640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1625011/11NBS-LRR disease resistance protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16210OsAffx.29742.3.S1_x_at11/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.1.S1_x_at6/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.2.S1_x_at5/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.22896.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210Os.47114.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16220OsAffx.29675.1.S1_x_at11/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.4.S1_x_at6/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.2.S1_x_at4/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.3.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220Os.45229.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16230NANA2+9223456..9223827hypothetical protein
LOC_Os02g16240OsAffx.24649.3.S1_at10/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16240OsAffx.24649.1.S1_at5/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16250OsAffx.2640.1.S1_at11/112+9238437..9239234NBS-LRR disease resistance protein, putative
LOC_Os02g16260OsAffx.24277.1.S1_at9/112+9240038..9243851Xa1, putative
LOC_Os02g16270Os.53610.1.S1_at11/112+9257996..9262612NB-ARC domain containing protein, expressed
LOC_Os02g16280OsAffx.25367.1.S1_at1/112+9263254..9267577retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2640.1.S1_at--784--4112Chr02:9238685..9238709 (25 bp)
CGCGACTACTTTCTCTGTTTTCCAA
LOC_Os02g16250
OsAffx.2640.1.S1_at--490--10292Chr02:9238703..9238727 (25 bp)
TTTCCAATCGTACCCTTCTAACATG
LOC_Os02g16250
OsAffx.2640.1.S1_at--115--6256Chr11:22583983..22584157 (25 bp)
GATGGATTTATCTCTGTACCTCCCA
NONE
OsAffx.2640.1.S1_at--1155--5794Chr12:5471326..5471366 (25 bp)
TACCTACCGGTACAAGTTGCTGGAT
NONE
OsAffx.2640.1.S1_at--15--7651Chr02:9238789..9238813 (25 bp)
GGGAGCAACGCTCAAGCAGTCGAAT
LOC_Os02g16250
OsAffx.2640.1.S1_at--596--8091Chr02:9238832..9238856 (25 bp)
GGACCAGCTCCAAAAATGTATTGCA
LOC_Os02g16250
OsAffx.2640.1.S1_at--705--8151Chr02:9238927..9238951 (25 bp)
GGAAATGCCTACTATCACCATTCAC
LOC_Os02g16250
OsAffx.2640.1.S1_at--321--1331Chr02:9238965..9238989 (25 bp)
AGAGGCAGCGTGGTTCTTGTCACAA
LOC_Os02g16250
OsAffx.2640.1.S1_at--190--2611Chr02:9238988..9239012 (25 bp)
AACCCGGTTTCCATATATAGCACAA
LOC_Os02g16250
OsAffx.2640.1.S1_at--669--6731Chr02:9239063..9239087 (25 bp)
GTTCTTCGCATTCTTTGAAGCATGT
LOC_Os02g16250
OsAffx.2640.1.S1_at--781--1611Chr02:9239180..9239204 (25 bp)
AGCGAAAACAGTTGGCCGGCTATTG
LOC_Os02g16250
Target Sequence 
CGCGACTACTTTCTCTGTTTTCCAATCGTACCCTTCTAACATGGACGGATGGATTTATCTCTGTACCTCCCAGTACCAGT
ACCTACCGGTACAAGTTGCTGGATGGGAGCAACGCTCAAGCAGTCGAATACATGAATCATCCAACTTGGACCAGCTCCAA
AAATGTATTGCACAAAGACTGAAATCCAAAAGATTTTTACTCGTCTTGGATGATATTTGGAAATGCAGCAGTGAAGATGA
GTGGAAATGCCTACTATCACCATTCACAAAGGGGGAGGCCAGAGGCAGCGTGGTTCTTGTCACAACCCGGTTTCCATATA
TAGCACAAATGGTGAAGACAACTAATCTGATAGAACTGCAAGGTCTAGAACACAATGAGTTCTTCGCATTCTTTGAAGCA
TGTATATTTGCTGATTGCAAACCTGAGATTTATGTTGACGACTTAATTGATATTGCAAAAGAAATTTCTATGAAATTGAA
GGGTTTCCCACTAGCAGCGAAAACAGTTGGCCGGCTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis