Browse Element(s) Details

OsAffx.29675.3.S1_x_at

Description

tigr:9634.m01369
TID=OsAffx.29675.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g13750	11/11	expressed protein
LOC_Os06g13890	8/11	hypothetical protein
LOC_Os02g16220	2/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g13690	Os.27160.1.A1_at	3/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13690	Os.25513.1.S1_at	1/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13700	OsAffx.31590.1.S1_at	9/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13700	OsAffx.11302.2.S1_at	1/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13710	OsAffx.28184.1.S1_x_at	11/11	6	+	7599957..7600523	glycosyltransferase, putative
LOC_Os06g13720	Os.54410.1.S1_at	11/11	6	+	7601365..7604690	Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os06g13730	Os.55225.1.S1_at	10/11	6	+	7606109..7606940	Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os06g13740	OsAffx.29742.5.S1_s_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.1.S1_x_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.2.S1_x_at	7/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.3.S1_x_at	6/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13750	OsAffx.29675.3.S1_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.3.S1_x_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.2.S1_x_at	8/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.1.S1_x_at	6/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.4.S1_x_at	3/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13760	OsAffx.27621.1.S1_s_at	11/11	6	+	7628758..7630268	glycosyl transferase family 8 protein, putative, expressed
LOC_Os06g13770	OsAffx.24421.1.S1_at	7/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13770	OsAffx.17654.2.S1_at	4/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13780	OsAffx.27622.2.S1_at	10/11	6	+	7641071..7643454	expressed protein
LOC_Os06g13780	OsAffx.27622.1.S1_x_at	8/11	6	+	7641071..7643454	expressed protein
LOC_Os06g13789	NA	NA	6	+	7644975..7645329	NA
LOC_Os06g13800	NA	NA	6	+	7646853..7647415	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.29675.3.S1_x_at--1074--237	3	Chr06:7739682..7739706 (25 bp)	AAACGAGAGCGAACCGTCTTGACCA	LOC_Os06g13890
OsAffx.29675.3.S1_x_at--938--33	2	Chr06:7740074..7740397 (25 bp)	ATAAGGCTGGTCACTATTTCGTGGT	LOC_Os06g13890
OsAffx.29675.3.S1_x_at--1048--1019	3	Chr09:542822..542846 (25 bp)	TATTTCGTGGTGTGCCTTAATCTGA	NONE
OsAffx.29675.3.S1_x_at--271--665	3	Chr06:7740187..7740211 (25 bp)	GTTGTTGCATCCATCAAGACCATGT	LOC_Os06g13890
OsAffx.29675.3.S1_x_at--194--551	1	Chr06:7619209..7619233 (25 bp)	GAAAACCATCCAGAATTACCCACTG	LOC_Os06g13750
OsAffx.29675.3.S1_x_at--835--333	3	Chr06:7740260..7740284 (25 bp)	CACTGATTTTCATTGATGGCCCAAA	LOC_Os06g13890
OsAffx.29675.3.S1_x_at--895--621	4	Chr06:7740274..7740296 (23 bp)	GATGGCCCAAAGCAAGATAACATTC	LOC_Os06g13890
OsAffx.29675.3.S1_x_at--151--449	4	Chr06:7740384..7740408 (25 bp)	GCCGGGATTGTGGTTTTTATATGCT	LOC_Os06g13890
OsAffx.29675.3.S1_x_at--137--21	4	Chr06:7740448..7740472 (25 bp)	ATTTGAACCAAGTGACATCCCCAAC	LOC_Os06g13890
OsAffx.29675.3.S1_x_at--1132--221	1	Chr06:7618956..7618980 (25 bp)	ACAAGATGCTCTCGTTTCAAGGAAA	LOC_Os06g13750
OsAffx.29675.3.S1_x_at--990--513	3	Chr06:7740546..7740570 (25 bp)	GCAAAGAGCCTGATCCTACACTTAA	LOC_Os06g13890

Target Sequence

AAACGAGAGCGAACCGTCTTGACCATAAAGAATTAGAATTGGGTAATGGGAATCATAAGGCTGGTCACTATTTCGTGGTG
TGCCTTAATCTGAAAGCTGAAAGATTCGAGGTTTATGATTCGCTGAGGGGAGAAGATGACGAAGCGCTGATTTCAGCATA
TCATCTTGTTGTTGCATCCATCAAGACCATGTGGGATAGGTTTTACATGAGGTCTTCGAAGAAAACCATCCAGAATTACC
CACTGATTTTCATTGATGGCCCAAAGCAAGATAACATTCAAACTTATCCCTGTTTTGTTTTTGCAAACAAAAACAGCCGG
GATTGTGGTTTTTATATGCTGAAATTTGTGGAGTTGTGGGATGGCAAACAGTTGCCAGCATTTGAACCAAGTGACATCCC
CAACATTAAGAAACTACTTACACACAAGATGCTCTCGTTTCAAGGAAATCGTGTGCAATGGATGCAAGTATTATGGGGCA
AAGAGCCTGATCCTACACTTAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis