Browse Element(s) Details


OsAffx.24421.1.S1_at

Description tigr:9637.m00990
TID=OsAffx.24421.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2547011/11transposon protein, putative, unclassified
LOC_Os09g126707/11transposon protein, putative, unclassified
LOC_Os06g137707/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25430Os.10731.1.A1_a_at11/112+14833960..14842701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25430Os.38764.1.S1_x_at6/112+14833960..14842701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25430Os.46610.1.S1_x_at4/112+14833960..14842701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25430Os.48015.1.A1_x_at2/112+14833960..14842701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25430Os.53292.1.S1_x_at1/112+14833960..14842701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25430OsAffx.22722.1.S1_at1/112+14833960..14842701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25430Os.53292.1.S1_at1/112+14833960..14842701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25430OsAffx.18229.1.S1_x_at1/112+14833960..14842701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25430Os.52049.1.S1_at1/112+14833960..14842701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25440OsAffx.20628.2.S1_x_at1/112+14843325..14846185retrotransposon protein, putative, unclassified
LOC_Os02g25440OsAffx.10496.1.S1_at1/112+14843325..14846185retrotransposon protein, putative, unclassified
LOC_Os02g25440OsAffx.20628.1.S1_at1/112+14843325..14846185retrotransposon protein, putative, unclassified
LOC_Os02g25460OsAffx.17654.2.S1_at4/112+14864372..14865388transposon protein, putative, unclassified
LOC_Os02g25470OsAffx.24421.1.S1_at11/112+14866049..14867052transposon protein, putative, unclassified
LOC_Os02g25480Os.41248.4.S1_x_at1/112+14869579..14873608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g25490Os.20851.1.A1_x_at1/112+14876722..14880521retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g25500NANA2+14884475..14887192retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24421.1.S1_at--924--4371Chr02:14866593..14866617 (25 bp)
CCAAGCGTCCTCGTGCTAAAACAAG
LOC_Os02g25470
OsAffx.24421.1.S1_at--438--2132Chr09:7251531..7251555 (25 bp)
ACAGGTTGCAAAGCTCGGATCGGAA
NONE
OsAffx.24421.1.S1_at--692--2591Chr02:14866486..14866510 (25 bp)
AACCACGAACTTCAATTGCCTTCAA
LOC_Os02g25470
OsAffx.24421.1.S1_at--744--73Chr09:7251436..7251460 (25 bp)
ATTGCCTTCAACATGCCATTTGATG
NONE
OsAffx.24421.1.S1_at--384--8293Chr09:7251351..7251375 (25 bp)
GGCATTGGACCAAAAGCTGCACATG
LOC_Os09g12670
OsAffx.24421.1.S1_at--1100--4753Chr09:7251336..7251360 (25 bp)
GCTGCACATGAGCTTGCTAGTCGGC
LOC_Os09g12670
OsAffx.24421.1.S1_at--838--9073Chr09:7251322..7251346 (25 bp)
TGCTAGTCGGCAAGTTGGTGGTTCA
LOC_Os09g12670
OsAffx.24421.1.S1_at--1074--7033Chr09:7251297..7251321 (25 bp)
GTAAACCTTGGTTATACACGTCGTG
LOC_Os09g12670
OsAffx.24421.1.S1_at--760--1233Chr09:7251187..7251211 (25 bp)
AGTTGCAGAGAACACTTCATTTCAT
LOC_Os09g12670
OsAffx.24421.1.S1_at--687--9593Chr09:7251171..7251195 (25 bp)
TCATTTCATTATGCCCTTCAGTTGG
LOC_Os09g12670
OsAffx.24421.1.S1_at--1155--6453Chr09:7251100..7251124 (25 bp)
GATAATCGACTATGCTCAGTTTGGA
LOC_Os09g12670
Target Sequence 
CCAAGCGTCCTCGTGCTAAAACAAGAACAGGTTGCAAAGCTCGGATCGGAATCACAGTAGATAGAGAAGTGGACGATTAT
TCAGTATATGATTTAGTTCTCGAACATAACCACGAACTTCAATTGCCTTCAACATGCCATTTGATGCCATCACAGAGAAA
GATATCATCATTGCAAGCATTTGAAATTGAAACAATGGATGATTCGGGCATTGGACCAAAAGCTGCACATGAGCTTGCTA
GTCGGCAAGTTGGTGGTTCAGTAAACCTTGGTTATACACGTCGTGNTCTCAAGAACCATTTANNAACCAAGCGTCAAAGG
GAGTTGATGTATGGCGAAGCCGGAAGTATGTTGAAGTACTTTCAGGACAAAGTTGCAGAGAACACTTCATTTCATTATGC
CCTTCAGTTGGATTGTGAAGAACAAATAACAAATATTTTTTGGGCTGATGCTAAGATGATAATCGACTATGCTCAGTTTG
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis