Browse Element(s) Details

Os.20851.1.A1_x_at

Description

gb:AK064111.1
DB_XREF= gi:32974129
TID=Os.20851.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G12, full insert sequence.
FL= gb:AK064111.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g27740	2/11	retrotransposon protein, putative, unclassified
LOC_Os02g39940	2/11	hypothetical protein
LOC_Os01g32500	2/11	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03040	2/11	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g35630	2/11	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10300	1/11	hypothetical protein
LOC_Os02g34900	1/11	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g37310	1/11	hypothetical protein
LOC_Os07g30040	1/11	retrotransposon protein, putative, unclassified
LOC_Os03g57230	1/11	hypothetical protein
LOC_Os02g25490	1/11	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10440	1/11	transposon protein, putative, CACTA, En/Spm sub-class

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g27700	OsAffx.15648.1.S1_at	1/11	6	+	15682978..15686666	Zinc knuckle family protein
LOC_Os06g27700	OsAffx.6300.1.S1_at	1/11	6	+	15682978..15686666	Zinc knuckle family protein
LOC_Os06g27710	NA	NA	6	+	15687316..15688566	hypothetical protein
LOC_Os06g27720	OsAffx.9996.1.S1_x_at	3/11	6	+	15694778..15701915	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27720	OsAffx.23450.1.S1_at	1/11	6	+	15694778..15701915	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27720	OsAffx.21269.1.S1_x_at	1/11	6	+	15694778..15701915	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27720	OsAffx.31761.1.S1_at	1/11	6	+	15694778..15701915	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27730	NA	NA	6	+	15703878..15705912	retrotransposon protein, putative, unclassified
LOC_Os06g27740	OsAffx.4378.1.S1_x_at	2/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27740	Os.20851.1.A1_x_at	2/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27740	OsAffx.25778.2.S1_at	1/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27740	OsAffx.15695.1.S1_x_at	1/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27750	NA	NA	6	+	15716182..15717302	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27760	Os.36369.1.S1_at	11/11	6	+	15717526..15720269	Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os06g27760	Os.57412.1.S1_at	10/11	6	+	15717526..15720269	Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os06g27770	Os.15988.1.S1_at	11/11	6	+	15723708..15726432	Isoflavone reductase homolog, putative, expressed
LOC_Os06g27780	NA	NA	6	+	15730436..15731075	transposon protein, putative, unclassified
LOC_Os06g27790	Os.24588.1.S1_at	11/11	6	+	15732747..15736720	Selenium-binding protein, putative, expressed
LOC_Os06g27800	Os.48168.1.S1_at	11/11	6	+	15737396..15743796	Uncharacterised protein family containing protein, expressed
LOC_Os06g27800	Os.48168.1.S2_at	10/11	6	+	15737396..15743796	Uncharacterised protein family containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.20851.1.A1_x_at--168--107	1	Chr02:32586750..32586774 (25 bp)	AGGGTATCATGCCTGGTACCTAAGT	NONE
Os.20851.1.A1_x_at--11--699	1	Chr02:32586765..32586789 (25 bp)	GTACCTAAGTACCATCCAGTATCCA	NONE
Os.20851.1.A1_x_at--814--283	1	Chr02:32586771..32586795 (25 bp)	AAGTACCATCCAGTATCCATGGGTA	NONE
Os.20851.1.A1_x_at--814--353	1	Chr02:32586777..32586801 (25 bp)	CATCCAGTATCCATGGGTACCATGT	NONE
Os.20851.1.A1_x_at--1139--99	1	Chr02:32586812..32586836 (25 bp)	AGGTACCAGATACCTATAATTATCA	NONE
Os.20851.1.A1_x_at--538--175	1	Chr02:32586873..32586897 (25 bp)	ACCTCGAGGGTATCATGCATGGTAC	NONE
Os.20851.1.A1_x_at--887--783	4	Chr11:6420900..6420923 (24 bp)	GGTACCTAGGTACCATCCATGGGTA	NONE
Os.20851.1.A1_x_at--503--785	1	Chr02:32586901..32586925 (25 bp)	GGTACCATCCATGGGTATCTGTTAA	NONE
Os.20851.1.A1_x_at--228--353	1	Chr02:32586906..32586930 (25 bp)	CATCCATGGGTATCTGTTAACAGTG	NONE
Os.20851.1.A1_x_at--1129--343	119	Chr12:18475683..18475707 (25 bp)	CAGTTGTCGGATTCTTGCTATATTC	NONE
Os.20851.1.A1_x_at--65--597	105	Chr12:25635506..25635530 (25 bp)	GAGAATGCGGCATGGCAAGTTATCT	NONE

Target Sequence

AGGGTATCATGCCTGGTACCTAAGTACCATCCAGTATCCATGGGTACCATGTGCATGGTATNAGGTACCAGATACCTATA
ATTATCANGTACCACATGGTACCTGATACCTATTNTACCTGATACCTCGAGGGTATCATGCATGGTACCTAGGTACCATC
CATGGGTATCTGTTAACAGTGAAATTTGGTAAGCCCAGAGTAGTCNATNGGCTTAGAGTCAGCATCGGNTTCNAAGTCCT
GAGATTAGCCGATGANAGTTNTCAAGTCNTCAGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTANTAAAG
GAAGCTTATCCANAAGAGACCGAGTTCAAAGAGAATGCGGCATGGCAAGTTATCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis