Browse Element(s) Details


OsAffx.6300.1.S1_at

Description tigr:9637.m01383
TID=OsAffx.6300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1649011/11hypothetical protein
LOC_Os01g363101/11hypothetical protein
LOC_Os07g150601/11hypothetical protein
LOC_Os06g277001/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16458Os.55739.1.S1_x_at11/119+10070448..10084738PDR-type ABC transporter 1, putative, expressed
LOC_Os09g16458Os.55739.1.S1_at11/119+10070448..10084738PDR-type ABC transporter 1, putative, expressed
LOC_Os09g16458Os.53008.1.S1_at11/119+10070448..10084738PDR-type ABC transporter 1, putative, expressed
LOC_Os09g16470OsAffx.22745.1.S1_x_at1/119+10091551..10092201hypothetical protein
LOC_Os09g16480NANA9+10095923..10096426Transposable element protein, putative, Retrotrans_gag
LOC_Os09g16490OsAffx.6300.1.S1_at11/119+10097567..10098970hypothetical protein
LOC_Os09g16500NANA9+10103565..10103885hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6300.1.S1_at--166--2111Chr09:10097649..10097673 (25 bp)
ACATGCCAAGAGACCGGGAGTATAC
LOC_Os09g16490
OsAffx.6300.1.S1_at--685--3232Chr09:10097655..10097679 (25 bp)
CAAGAGACCGGGAGTATACTCACAC
LOC_Os09g16490
OsAffx.6300.1.S1_at--722--6931Chr09:10098468..10098492 (25 bp)
GTAGGTCGAACATACAGGGAGATAT
LOC_Os09g16490
OsAffx.6300.1.S1_at--314--4111Chr09:10098474..10098498 (25 bp)
CGAACATACAGGGAGATATGCAACA
LOC_Os09g16490
OsAffx.6300.1.S1_at--991--7971Chr09:10098575..10098599 (25 bp)
GGATGTAACCGGATGGAGCCAAGCT
LOC_Os09g16490
OsAffx.6300.1.S1_at--729--8731Chr09:10098578..10098602 (25 bp)
TGTAACCGGATGGAGCCAAGCTCCA
LOC_Os09g16490
OsAffx.6300.1.S1_at--141--6191Chr09:10098642..10098666 (25 bp)
GAGGACCTACGGCATGTGCCTCATG
LOC_Os09g16490
OsAffx.6300.1.S1_at--340--4355Chr09:10098699..10098824 (25 bp)
CCAGATCAAGTGGTCCAATACAACC
LOC_Os09g16490
OsAffx.6300.1.S1_at--1045--3391Chr09:10098902..10098926 (25 bp)
CAGCAAAAGCCCGATGACCTTCAAA
LOC_Os09g16490
OsAffx.6300.1.S1_at--171--2351Chr09:10098907..10098931 (25 bp)
AAAGCCCGATGACCTTCAAACATAC
LOC_Os09g16490
OsAffx.6300.1.S1_at--955--4531Chr09:10098910..10098934 (25 bp)
GCCCGATGACCTTCAAACATACTTC
LOC_Os09g16490
Target Sequence 
ACATGCCAAGAGACCGGGAGTATACTCACACGCGAGAATACTCTCTGGAGCTATTGGAAAAGATAGGTATGGATACTAAC
TTTCGTGCTATCTGGAAAGTTGTTGGTTGGCAGAGATTTGCTGTGACCATAGAAGAATCTTGTGTAGGTCGAACATACAG
GGAGATATGCAACATGGCAAGGAATGAACGAGAAGGTTCATCATCCTCAACACCCGTGCAAACGTATGAGGCAGGTTGGG
AGCTGACTGGGGATGTAACCGGATGGAGCCAAGCTCCACGCCACAGCATCGGAGTCTCAAAATGGGCAAGTGCCAATGAG
GACCTACGGCATGTGCCTCATGACATACAGTGGGGGGACATGAGCAATCAACCCCCAGATCAAGTGGTCCAATACAACCT
CGAGGAACACATAGCACAAGCGCAAGAATGGCAACAAACTACTGATGCTCAGTTCACCAACATCAACAACCTGATGCAGC
AAAAGCCCGATGACCTTCAAACATACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis