Browse Element(s) Details


Os.53008.1.S1_at

Description gb:AK070409.1
DB_XREF= gi:32980433
TID=Os.53008.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054N07, full insert sequence.
FL= gb:AK070409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1645811/11PDR-type ABC transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16430OsAffx.22947.1.S1_x_at5/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.2.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.3.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.5.S1_x_at2/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16440NANA9+10049545..10055913transposon protein, putative, Mutator sub-class
LOC_Os09g16449Os.11363.1.S1_at11/119+10065481..10068845ABC transporter family protein, expressed
LOC_Os09g16449OsAffx.29871.2.S1_x_at11/119+10065481..10068845ABC transporter family protein, expressed
LOC_Os09g16458Os.55739.1.S1_x_at11/119+10070448..10084738PDR-type ABC transporter 1, putative, expressed
LOC_Os09g16458Os.55739.1.S1_at11/119+10070448..10084738PDR-type ABC transporter 1, putative, expressed
LOC_Os09g16458Os.53008.1.S1_at11/119+10070448..10084738PDR-type ABC transporter 1, putative, expressed
LOC_Os09g16470OsAffx.22745.1.S1_x_at1/119+10091551..10092201hypothetical protein
LOC_Os09g16480NANA9+10095923..10096426Transposable element protein, putative, Retrotrans_gag
LOC_Os09g16490OsAffx.6300.1.S1_at11/119+10097567..10098970hypothetical protein
LOC_Os09g16500NANA9+10103565..10103885hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53008.1.S1_at--876--2371Chr09:10082836..10082860 (25 bp)
AAACGTTCAACGTAAACTCTGCAGT
LOC_Os09g16458
Os.53008.1.S1_at--100--2551Chr09:10082822..10082846 (25 bp)
AACTCTGCAGTCTTTATGGGACGCA
LOC_Os09g16458
Os.53008.1.S1_at--486--9891Chr09:10082730..10082754 (25 bp)
TACTTGATTCTCTAACTTTCTATGT
LOC_Os09g16458
Os.53008.1.S1_at--25--1191Chr09:10082631..10082655 (25 bp)
AGTAGTACCAGACCTTGCCTAGTAA
LOC_Os09g16458
Os.53008.1.S1_at--399--5131Chr09:10082550..10082574 (25 bp)
GCAAAGTGGGTGTAGCTCCATCAGT
LOC_Os09g16458
Os.53008.1.S1_at--1063--1591Chr09:10082537..10082561 (25 bp)
AGCTCCATCAGTTAGGTTTCTTGTG
LOC_Os09g16458
Os.53008.1.S1_at--760--6832Chr05:25603967..25603991 (25 bp)
GTTTCTTGTGATGGAACCTGCCCAC
NONE
Os.53008.1.S1_at--41--3351Chr09:10082500..10082524 (25 bp)
CACGGAGATCACATTTACGGCTAAT
LOC_Os09g16458
Os.53008.1.S1_at--256--7891Chr09:10082419..10082443 (25 bp)
GGTTAACCTCAAAATATGTCATCCG
LOC_Os09g16458
Os.53008.1.S1_at--1132--6471Chr09:10082393..10082417 (25 bp)
GTTTTACGAAGGTGCTCATACGGGT
LOC_Os09g16458
Os.53008.1.S1_at--292--6011Chr09:10082328..10082352 (25 bp)
GAGAGCACATGCGTTTGCATTGTAT
LOC_Os09g16458
Target Sequence 
AAACGTTCAACGTAAACTCTGCAGTCTTTATGGGACGCAGGTAGTACAAGTTTGAAAATATCACTAAATCATTTTATGTG
AAATTTATTTATTTTTCCTGAAATATTACTTGATTCTCTAACTTTCTATGTTCAATTTTTTTGATAAATTCCATGCTAAT
TTTACTTCATGTTTAACGTTTGCAAATGATCATTTTTGTATGAAAAGTAGTACCAGACCTTGCCTAGTAAATACATATAT
TTAAATAAAATATTTACAAACGGAGAACCAATTTATCAGAATTTTTGCAAAGTGGGTGTAGCTCCATCAGTTAGGTTTCT
TGTGATGGAACCTGCCCACGGAGATCACATTTACGGCTAATTATATTTTTATTCATAGGCGATGTACCTATCGATAGAGA
GACAACCGTGGTAACTTGGTTAACCTCAAAATATGTCATCCGAGTTTTACGAAGGTGCTCATACGGGTAGGGTGTGCGTG
TGCGTTGAGGGATGAGTGTGCGCGTTTTGAGAGCACATGCGTTTGCATTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis