Browse Element(s) Details


OsAffx.29871.2.S1_x_at

Description tigr:9637.m01379
TID=OsAffx.29871.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1644911/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16420NANA9+10041143..10041733retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.1.S1_x_at5/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.2.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.3.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.5.S1_x_at2/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16440NANA9+10049545..10055913transposon protein, putative, Mutator sub-class
LOC_Os09g16449Os.11363.1.S1_at11/119+10065481..10068845ABC transporter family protein, expressed
LOC_Os09g16449OsAffx.29871.2.S1_x_at11/119+10065481..10068845ABC transporter family protein, expressed
LOC_Os09g16458Os.55739.1.S1_x_at11/119+10070448..10084738PDR-type ABC transporter 1, putative, expressed
LOC_Os09g16458Os.55739.1.S1_at11/119+10070448..10084738PDR-type ABC transporter 1, putative, expressed
LOC_Os09g16458Os.53008.1.S1_at11/119+10070448..10084738PDR-type ABC transporter 1, putative, expressed
LOC_Os09g16470OsAffx.22745.1.S1_x_at1/119+10091551..10092201hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29871.2.S1_x_at--322--3131Chr09:10066131..10066155 (25 bp)
AATTTCTTTGGTACCTCTTCTTCAT
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--894--8791Chr09:10066107..10066131 (25 bp)
TGTTCTTCACACTATCATACTTCAC
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--984--6271Chr09:10066070..10066094 (25 bp)
GATGATGGCGGGTTTGACTCCAAAC
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--589--3031Chr09:10066045..10066069 (25 bp)
AATGCCATGTCTGCTGTTGTTTCCA
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--35--3871Chr09:10066032..10066056 (25 bp)
CTGTTGTTTCCACGGCATTCTATAA
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--787--9731Chr09:10065881..10066005 (25 bp)
TAATACCACGGATTAGAATTCCAGT
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--1040--8691Chr09:10065833..10065857 (25 bp)
TGTGCCCTGTTGCTTGGACACTCAA
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--248--1251Chr09:10065685..10065709 (25 bp)
AGTTGTCTCCTTTGCTATTCTCTTT
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--562--10411Chr09:10065652..10065676 (25 bp)
TTTTGGACTCTCACTTAGGCTATTC
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--394--5851Chr09:10065601..10065625 (25 bp)
GACCATGTCGAGTTTCAGACTTTGA
LOC_Os09g16449
OsAffx.29871.2.S1_x_at--876--4891Chr09:10065513..10065537 (25 bp)
GCTTACAAGCATCTGTTTTGCCAAT
LOC_Os09g16449
Target Sequence 
AATTTCTTTGGTACCTCTTCTTCATGTTCTTCACACTATCATACTTCACATTTTATGGCATGATGATGGCGGGTTTGACT
CCAAACAATGCCATGTCTGCTGTTGTTTCCACGGCATTCTATAACATATGGAACCTTTTCTCAGGATTTCTAATACCACG
GATTAGAATTCCAGTATGGTGGAGGTGGTACTATTGGATGTGCCCTGTTGCTTGGACACTCAATGGATTGCTTACATCAC
AGTTTGGGGATGTAAATGACAAGTTTAATAATGGCGTGAGTGTATCTGACTTTATCGAGAGCTACTTTGGTTACAAGCAG
GACTTGTTGTGGGTGGCCGCTGTGGCAGTTGTCTCCTTTGCTATTCTCTTTGCCTTCCTTTTTGGACTCTCACTTAGGCT
ATTCAACTTCCAGAAGAGATAAGTAAGGAAGACCATGTCGAGTTTCAGACTTTGATCAAATATTGGTTATCATAGATGTT
TTACAGTATGTGCATAATGGCATAATGGCATATAACATGCTTACAAGCATCTGTTTTGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29871.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis