Browse Element(s) Details


OsAffx.22947.5.S1_x_at

Description gb:NM_188116.1
DB_XREF= gi:34903315
TID=OsAffx.22947.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1712011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g332504/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g044904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g505004/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g255904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g456304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g397403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g311603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g062593/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g152103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g413303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g361603/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g444903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g169203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g136103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g197403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g134203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g293803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g368003/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g493303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g322203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g062683/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g475403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g012403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g357103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g034903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g152603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g343503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g247303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g201503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g296703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g197703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g215603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g075203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g216403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g194103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g174893/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g109203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g182003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g222403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g054203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g181603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g363603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g166503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g393303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g109703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g280102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g192402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g200202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g047402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g151002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g106202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g400302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g383202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g191502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g312402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g164302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g238302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g558902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g201102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g517702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g198302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g539602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g420502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g264602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g012802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g083901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g297901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g291301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g109201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g253301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g392501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g715301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g262601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g305801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g303401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g494901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g166001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g024601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g197501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g361901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17070Os.50.3.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.2.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.3.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.1.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_x_at9/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_at7/111+9813599..9819528expressed protein
LOC_Os01g17080OsAffx.22179.1.S1_at11/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17080OsAffx.23752.1.S1_at5/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17090OsAffx.2023.1.S1_at11/111+9824992..9825333hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_s_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_x_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17110OsAffx.20501.1.S1_at3/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17110OsAffx.21756.3.S1_x_at1/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22947.5.S1_x_at--822--632Chr06:18104008..18104032 (25 bp)
ATGCATCTCGCCAAGGGTTAGGGTG
LOC_Os06g31160
OsAffx.22947.5.S1_x_at--446--10432Chr08:12049310..12049334 (25 bp)
TTATGCTTCACGTCAGTTGCGTCCT
LOC_Os08g20110
OsAffx.22947.5.S1_x_at--927--9951Chr01:9837322..9837346 (25 bp)
TACCCGACCCACGATCTGAAATTGG
LOC_Os01g17120
OsAffx.22947.5.S1_x_at--818--22358Chr12:24719899..24719922 (24 bp)
AAATTGGCCGCAGTTGTTCATGCTT
LOC_Os12g40030
OsAffx.22947.5.S1_x_at--711--51160Chr12:11115909..11115933 (25 bp)
GCACTATCTCATCGGTAACCGTTGT
LOC_Os12g19150
OsAffx.22947.5.S1_x_at--563--3351Chr01:9837203..9837227 (25 bp)
CACCCAAGCTGATCTGAATCTCCGA
LOC_Os01g17120
OsAffx.22947.5.S1_x_at--1110--25725Chr11:14095444..14095468 (25 bp)
AACGTCGCATGGGTAGAGGAACTAT
LOC_Os11g25590
OsAffx.22947.5.S1_x_at--455--2150Chr12:24720172..24720196 (25 bp)
ATTTGGAACATCTGAACCTTGGTAT
LOC_Os12g40030
OsAffx.22947.5.S1_x_at--995--1491Chr01:9837000..9837024 (25 bp)
AGCACGGATTTGTGGCTGCCCTAGT
LOC_Os01g17120
OsAffx.22947.5.S1_x_at--338--45514Chr11:14095548..14095776 (25 bp)
GCCCACACTGGTGGATACCAAAATG
LOC_Os11g25590
OsAffx.22947.5.S1_x_at--926--4113Chr07:15102428..15102452 (25 bp)
CGCACTCTGTGATGTCTGTCAGCGA
LOC_Os07g26260
Target Sequence 
ATGCATCTCGCCAAGGGTTAGGGTGTGTGGTGATGCAAGATGGCAAAGTGGTTGCTTATGCTTCACGTCAGTTGCGTCCT
CATGAAGGCAACTACCCGACCCACGATCTGAAATTGGCCGCAGTTGTTCATGCTTTAAAGATCTGGCGGCACTATCTCAT
CGGTAACCGTTGTGAGGTATATACAGATCACAAAAGTCTAAAGTACATCTTCACCCAAGCTGATCTGAATCTCCGACAGC
GAAGATGGTTGGAGCTAATTAAAGATTATGATATGGGAATACACTATTATCCCGGCAAGGCTAATGTGGTAGCAGATGCC
TTGAGCAGGAAGAGCTACTGCAACGTCGCATGGGTAGAGGAACTATGCTGTGAGGTTCAACGTGATTTGGAACATCTGAA
CCTTGGTATAGTTGAGCACGGATTTGTGGCTGCCCTAGTGGCACAGCCCACACTGGTGGATACCAAAATGTACCAAGACC
TCAAAGAAAAATTCTGGTGGGTCAGCATGAGAAGGGAAATAGCTGAATTCGTCGCACTCTGTGATGTCTGTCAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22947.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis