Browse Element(s) Details


Os.43666.2.S1_x_at

Description gb:NM_188120.1
DB_XREF= gi:34903323
TID=Os.43666.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1716011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43666.2.S1_x_at--847--4751Chr01:9866515..9866539 (25 bp)
GCTGAACATCGTGGCGCATAAGGAC
LOC_Os01g17160
Os.43666.2.S1_x_at--392--351Chr01:9866532..9866556 (25 bp)
ATAAGGACGGCAACGACGGCTCGCT
LOC_Os01g17160
Os.43666.2.S1_x_at--14--5751Chr01:9866546..9866570 (25 bp)
GACGGCTCGCTGCTGAAATCCATGG
LOC_Os01g17160
Os.43666.2.S1_x_at--503--3031Chr01:9866562..9866586 (25 bp)
AATCCATGGCCGGTGAGCCGTTGTC
LOC_Os01g17160
Os.43666.2.S1_x_at--624--10811Chr01:9866582..9866606 (25 bp)
TTGTCCGTCGTGCTGATCGTGTACA
LOC_Os01g17160
Os.43666.2.S1_x_at--606--3711Chr01:9866653..9866674 (22 bp)
CTACCTCATGAGCACAAACCAGACA
LOC_Os01g17160
Os.43666.2.S1_x_at--296--3431Chr01:9867181..9867205 (25 bp)
CAGAGGTGTTCTGCGCTGGGATCCC
LOC_Os01g17160
Os.43666.2.S1_x_at--829--7951Chr01:9867199..9867223 (25 bp)
GGATCCCGCCGTCGATGAACAACTT
LOC_Os01g17160
Os.43666.2.S1_x_at--104--2471Chr01:9867216..9867240 (25 bp)
AACAACTTCCGGTCATGGGTGGCGC
LOC_Os01g17160
Os.43666.2.S1_x_at--1037--1431Chr01:9867403..9867427 (25 bp)
AGAACGATGTCAGCGTGCATATCAA
LOC_Os01g17160
Os.43666.2.S1_x_at--21--971Chr01:9867487..9867511 (25 bp)
AGGACTGTGAGAGTACTCCGACGGC
LOC_Os01g17160
Target Sequence 
GCTGAACATCGTGGCGCATAAGGACGGCAACGACGGCTCGCTGCTGAAATCCATGGCCGGTGAGCCGTTGTCCGTCGTGC
TGATCGTGTACACCTTCGTCTCGGTGTGGTTTGTCGGCGGCCTCACCGTGTTCCACCTCTACCTCATGAGCACAAACCAG
ACAACGTACGAGAACTTCAGATATAGGTACGACAAGAAGGAGAACCCGTATAACAGGGGTGCTATATCGAACATAGCAGA
GGTGTTCTGCGCTGGGATCCCGCCGTCGATGAACAACTTCCGGTCATGGGTGGCGCCGCCGCCGCTGGAGGAGCCGGACG
ACGTCAGCGGGCAGCTTCCGCCGAGGAACGGGGCCGATCTCACCGGCGGCGTGAAGGAGAAGGTGGACCTGGAGATGGGC
CGCAACGGCGGCATCATCCCGGCGATCTTGCGGGGGCTGGACTACGACGAGATGGAGAAGAACGATGTCAGCGTGCATAT
CAAGGATCGGGGAGCGGCACCGGCAGCGCCGGACCCATTCATGGCCGGCCGGTGGCACAACGAGGACTGTGAGAGTACTC
CGACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43666.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis