Browse Element(s) Details


OsAffx.2024.1.S1_at

Description tigr:9629.m01714
TID=OsAffx.2024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1718010/11COP9 signalosome complex subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2024.1.S1_at--777--3791NONE
CTCCAAAGGATATGCTAGCTGTCCA
NONE
OsAffx.2024.1.S1_at--518--2911Chr01:9877035..9877058 (24 bp)
AAGGATATGCTAGCTGTCCATGGCG
LOC_Os01g17180
OsAffx.2024.1.S1_at--60--7951Chr01:9877036..9877060 (25 bp)
GGATATGCTAGCTGTCCATGGCGAG
LOC_Os01g17180
OsAffx.2024.1.S1_at--438--251Chr01:9877038..9877062 (25 bp)
ATATGCTAGCTGTCCATGGCGAGCA
LOC_Os01g17180
OsAffx.2024.1.S1_at--343--631Chr01:9877040..9877064 (25 bp)
ATGCTAGCTGTCCATGGCGAGCATC
LOC_Os01g17180
OsAffx.2024.1.S1_at--283--7831Chr01:9877072..9877096 (25 bp)
GGTCAGCTGGCAGTGTCACGTGACT
LOC_Os01g17180
OsAffx.2024.1.S1_at--587--3391Chr01:9877075..9877099 (25 bp)
CAGCTGGCAGTGTCACGTGACTGTG
LOC_Os01g17180
OsAffx.2024.1.S1_at--221--3471Chr01:9877082..9877106 (25 bp)
CAGTGTCACGTGACTGTGTGAGGGA
LOC_Os01g17180
OsAffx.2024.1.S1_at--453--4631Chr01:9877111..9877135 (25 bp)
GCGTTAACGAGTGTGCATGGCCTAT
LOC_Os01g17180
OsAffx.2024.1.S1_at--1086--9791Chr01:9877115..9877139 (25 bp)
TAACGAGTGTGCATGGCCTATGGTG
LOC_Os01g17180
OsAffx.2024.1.S1_at--634--3491Chr01:9877126..9877150 (25 bp)
CATGGCCTATGGTGGAGTAGGTATA
LOC_Os01g17180
Target Sequence 
CTCCAAAGGATATGCTAGCTGTCCATGGCGAGCATCTGGGTGGGGTCAGCTGGCAGTGTCACGTGACTGTGTGAGGGAGG
GGGCGTTAACGAGTGTGCATGGCCTATGGTGGAGTAGGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis