Browse Element(s) Details


OsAffx.23281.1.S1_x_at

Description gb:NM_188125.1
DB_XREF= gi:34903333
TID=OsAffx.23281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1721411/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed
LOC_Os01g17250Os.50964.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17250Os.436.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23281.1.S1_x_at--918--7771Chr01:9899300..9899324 (25 bp)
GGTGCCTGACGGAGGAGAGGTGCAA
LOC_Os01g17214
OsAffx.23281.1.S1_x_at--869--6171Chr01:9899289..9899313 (25 bp)
GAGGAGAGGTGCAAGGCCGACGCCG
LOC_Os01g17214
OsAffx.23281.1.S1_x_at--352--9973Chr05:10733981..10734003 (23 bp)
TACCTCAACTTCTTCTACATCTGGG
NONE
OsAffx.23281.1.S1_x_at--783--10571Chr01:9899244..9899268 (25 bp)
TTCTACATCTGGGTCGTCTGCCTCT
LOC_Os01g17214
OsAffx.23281.1.S1_x_at--674--9871Chr01:9899241..9899265 (25 bp)
TACATCTGGGTCGTCTGCCTCTGCT
LOC_Os01g17214
OsAffx.23281.1.S1_x_at--728--7231Chr01:9896550..9896574 (25 bp)
GTCGCTACCGCCCTGCAAAAAAGAT
LOC_Os01g17214
OsAffx.23281.1.S1_x_at--661--4851Chr01:9896547..9896571 (25 bp)
GCTACCGCCCTGCAAAAAAGATCTG
LOC_Os01g17214
OsAffx.23281.1.S1_x_at--554--9951Chr01:9896545..9896569 (25 bp)
TACCGCCCTGCAAAAAAGATCTGCG
LOC_Os01g17214
OsAffx.23281.1.S1_x_at--1051--4131Chr01:9896542..9896566 (25 bp)
CGCCCTGCAAAAAAGATCTGCGATT
LOC_Os01g17214
OsAffx.23281.1.S1_x_at--499--4191Chr01:9896540..9896564 (25 bp)
CCCTGCAAAAAAGATCTGCGATTTT
LOC_Os01g17214
OsAffx.23281.1.S1_x_at--280--3271Chr01:9896535..9896559 (25 bp)
CAAAAAAGATCTGCGATTTTTCAGT
LOC_Os01g17214
Target Sequence 
GGTGCCTGACGGAGGAGAGGTGCAAGGCCGACGCCGGCATCCCCTACCTCAACTTCTTCTACATCTGGGTCGTCTGCCTC
TGCTCCTTCCCTCGTCGCTACCGCCCTGCAAAAAAGATCTGCGATTTTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23281.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis