Browse Element(s) Details


OsAffx.22176.1.S1_at

Description gb:NM_188124.1
DB_XREF= gi:34903331
TID=OsAffx.22176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g172149/11transporter, putative, expressed
LOC_Os07g083101/11major facilitator superfamily antiporter, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed
LOC_Os01g17250Os.50964.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17250Os.436.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22176.1.S1_at--897--2651Chr01:9887842..9887864 (23 bp)
AAGCCATTCCGTTATGCAGCGGTCT
LOC_Os01g17214
OsAffx.22176.1.S1_at--401--1671Chr01:9887842..9887863 (22 bp)
AGCCATTCCGTTATGCAGCGGTCTT
LOC_Os01g17214
OsAffx.22176.1.S1_at--873--91Chr01:9887750..9887859 (25 bp)
ATTCCGTTATGCAGCGGTCTTGTCT
LOC_Os01g17214
OsAffx.22176.1.S1_at--565--4031Chr01:9887746..9887855 (25 bp)
CGTTATGCAGCGGTCTTGTCTATAC
LOC_Os01g17214
OsAffx.22176.1.S1_at--417--2171NONE
AAATATGTTCGCTAATAAAAAGGAG
NONE
OsAffx.22176.1.S1_at--948--10611NONE
TTCGCTAATAAAAAGGAGATGACCA
NONE
OsAffx.22176.1.S1_at--501--6311Chr01:9886898..9886922 (25 bp)
GATGACCAATCAATCAATCTCTTTG
LOC_Os01g17214
OsAffx.22176.1.S1_at--1005--5851Chr01:9886895..9886919 (25 bp)
GACCAATCAATCAATCTCTTTGCTT
LOC_Os01g17214
OsAffx.22176.1.S1_at--648--9731Chr01:9886889..9886913 (25 bp)
TCAATCAATCTCTTTGCTTGATGCA
LOC_Os01g17214
OsAffx.22176.1.S1_at--803--10711Chr01:9886876..9886900 (25 bp)
TTGCTTGATGCAGGTTTTCATGGGC
LOC_Os01g17214
OsAffx.22176.1.S1_at--50--3632Chr07:4249874..4249894 (21 bp)
CTTGATGCAGGTTTTCATGGGCGCA
LOC_Os07g08310
Target Sequence 
AAGCCATTCCGTTATGCAGCGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCATGGCTAACCTGTATGGTCTGGA
GCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTAATAAAAAGGAGATGACCAATCAATCAATCT
CTTTGCTTGATGCAGGTTTTCATGGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis