Browse Element(s) Details


Os.19793.1.S1_at

Description gb:AK058646.1
DB_XREF= gi:32968664
TID=Os.19793.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E09, full insert sequence.
FL= gb:AK058646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1719011/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19793.1.S1_at--942--7872Chr01:9885586..9885610 (25 bp)
GGTTTTATCTCTGCTGCTGAATTGC
LOC_Os01g17190
Os.19793.1.S1_at--605--9111Chr01:9885597..9885621 (25 bp)
TGCTGCTGAATTGCGTCACGTCATG
LOC_Os01g17190
Os.19793.1.S1_at--170--4651Chr01:9885609..9885633 (25 bp)
GCGTCACGTCATGACTAACCTTGGT
LOC_Os01g17190
Os.19793.1.S1_at--1049--6671Chr01:9885854..9885878 (25 bp)
GTTCCAAACCGAAATTCTTGATATT
LOC_Os01g17190
Os.19793.1.S1_at--440--571Chr01:9885886..9885910 (25 bp)
ATCCTATGCTGTAGACAATGCTTTC
LOC_Os01g17190
Os.19793.1.S1_at--81--631Chr01:9885891..9885915 (25 bp)
ATGCTGTAGACAATGCTTTCTGTTT
LOC_Os01g17190
Os.19793.1.S1_at--14--2311Chr01:9885940..9885964 (25 bp)
AAATGGCTCTGATCTTTGTGATTTT
LOC_Os01g17190
Os.19793.1.S1_at--849--9731Chr01:9886023..9886047 (25 bp)
TAATCAAAACCATCCATGCTTGTGC
LOC_Os01g17190
Os.19793.1.S1_at--106--2371Chr01:9886029..9886053 (25 bp)
AAACCATCCATGCTTGTGCTATATT
LOC_Os01g17190
Os.19793.1.S1_at--513--9071Chr01:9886039..9886063 (25 bp)
TGCTTGTGCTATATTCATTCTACCA
LOC_Os01g17190
Os.19793.1.S1_at--869--7711Chr01:9886074..9886098 (25 bp)
GGGTGATATACGATCATATTCTCAT
LOC_Os01g17190
Target Sequence 
GGTTTTATCTCTGCTGCTGAATTGCGTCACGTCATGACTAACCTTGGTGAGAAGCTGACAGATGAGGAGGTTGAAGAGAT
GATCCGTGAGGCCGATGTTGATGGTGATGGGCAGATCAACTACGATGAATTCGTTAAAGTCATGATGGCCAAGTAAGTTG
AAGCATCATTTGGATCAACACAGGGGGAGTTCCAGTAGCCATACTGTCAGAGGCTAAAATTATCTTTATTAATTTTATGT
TCAGATGTAATTTTGTGGGGATAGATATGTTCCAAACCGAAATTCTTGATATTCAGAGANATCCTATGCTGTAGACAATG
CTTTCTGTTTGTTTGTGATTTTTCTGTTTGTGAAAAATGGCTCTGATCTTTGTGATTTTGTTTATTCAATTACTCTATGT
TTGTTTCAACTTTTCAAGGGTGTAGCCATTCTGTTGTTAATCAAAACCATCCATGCTTGTGCTATATTCATTCTACCANT
ATTAATTTGGGTGATATACGATCATATTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis