Browse Element(s) Details


Os.25964.1.S1_a_at

Description gb:AK107911.1
DB_XREF= gi:32993120
TID=Os.25964.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G06, full insert sequence.
FL= gb:AK103258.1 gb:AK063907.1 gb:AK107911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1718011/11COP9 signalosome complex subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25964.1.S1_a_at--455--9191Chr01:9879342..9879366 (25 bp)
TGCCTATAGGGAGATGTTGACATAC
LOC_Os01g17180
Os.25964.1.S1_a_at--404--2271Chr01:9879370..9879394 (25 bp)
AAATCTGCTGTGACACGTAACTACA
LOC_Os01g17180
Os.25964.1.S1_a_at--574--2511Chr01:9879412..9879436 (25 bp)
AACATTATGGATTTTGTCTCCGGAT
LOC_Os01g17180
Os.25964.1.S1_a_at--597--8711Chr01:9879426..9879450 (25 bp)
TGTCTCCGGATCAGCTAGTCAAAAC
LOC_Os01g17180
Os.25964.1.S1_a_at--67--10071Chr01:9879441..9879465 (25 bp)
TAGTCAAAACTTCTCTCTTCTGCAA
LOC_Os01g17180
Os.25964.1.S1_a_at--442--9571Chr01:9879456..9879480 (25 bp)
TCTTCTGCAAGAGTTCTACCAGACA
LOC_Os01g17180
Os.25964.1.S1_a_at--429--1711Chr01:9879473..9879497 (25 bp)
ACCAGACAACACTGAAAGCACTTGA
LOC_Os01g17180
Os.25964.1.S1_a_at--181--10111Chr01:9879653..9879768 (25 bp)
TATGGCCGGATGAGCAAGATACTGA
LOC_Os01g17180
Os.25964.1.S1_a_at--1032--5291Chr01:9879767..9879791 (25 bp)
GAAGGAGCTGCATAAATCTTGTCAA
LOC_Os01g17180
Os.25964.1.S1_a_at--371--2891Chr01:9879820..9879844 (25 bp)
AAGGCACACAACTTTTGGAAGTCTA
LOC_Os01g17180
Os.25964.1.S1_a_at--1020--8191Chr01:9879836..9879860 (25 bp)
GGAAGTCTATGCTATTGAGATCCAA
LOC_Os01g17180
Target Sequence 
TGCCTATAGGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTATGG
ATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAG
GCAAAGAATGAGAGATTATGGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGAT
GAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTT
TGGAAGTCTATGCTATTGAGATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25964.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis