Browse Element(s) Details


Os.7948.1.S1_a_at

Description gb:AK120429.1
DB_XREF= gi:37990052
TID=Os.7948.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095M10, full insert sequence.
FL= gb:AK120429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1715011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17110OsAffx.20501.1.S1_at3/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17110OsAffx.21756.3.S1_x_at1/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7948.1.S1_a_at--963--3191Chr01:9856989..9857013 (25 bp)
CAAGGCTCCAGTGCAAGAATCTCTC
LOC_Os01g17150
Os.7948.1.S1_a_at--1154--1111Chr01:9856998..9857022 (25 bp)
AGTGCAAGAATCTCTCCTCGCAGAG
LOC_Os01g17150
Os.7948.1.S1_a_at--212--5051Chr01:9857017..9857041 (25 bp)
GCAGAGCCCTCTGAATGCTTCTTTC
LOC_Os01g17150
Os.7948.1.S1_a_at--205--4291Chr01:9857024..9857048 (25 bp)
CCTCTGAATGCTTCTTTCACCAAGA
LOC_Os01g17150
Os.7948.1.S1_a_at--932--3651Chr01:9857037..9857061 (25 bp)
CTTTCACCAAGAAGAGGCTAGTTTC
LOC_Os01g17150
Os.7948.1.S1_a_at--856--2791Chr01:9857048..9857072 (25 bp)
AAGAGGCTAGTTTCTGTCCATGCCT
LOC_Os01g17150
Os.7948.1.S1_a_at--441--1211Chr01:9857056..9857080 (25 bp)
AGTTTCTGTCCATGCCTCGGCAGAG
LOC_Os01g17150
Os.7948.1.S1_a_at--579--1811Chr01:9857125..9857149 (25 bp)
ACCCACGGTTTCGATTGAGACAATG
LOC_Os01g17150
Os.7948.1.S1_a_at--469--6831Chr01:9857132..9857156 (25 bp)
GTTTCGATTGAGACAATGCCGCTCG
LOC_Os01g17150
Os.7948.1.S1_a_at--374--3031Chr01:9857146..9857170 (25 bp)
AATGCCGCTCGAAACTAAGCAGAAG
LOC_Os01g17150
Os.7948.1.S1_a_at--65--10131Chr01:9857347..9857371 (25 bp)
TATGTTCTGTTCATCCGTCTCTGTA
LOC_Os01g17150
Target Sequence 
CAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT
GCCTCGGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAAT
GCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCA
GGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAA
CCAGCAGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7948.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis