Browse Element(s) Details


OsAffx.2023.1.S1_at

Description tigr:9629.m01704
TID=OsAffx.2023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1709011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17070Os.50.3.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.2.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.3.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.1.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_x_at9/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_at7/111+9813599..9819528expressed protein
LOC_Os01g17080OsAffx.22179.1.S1_at11/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17080OsAffx.23752.1.S1_at5/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17090OsAffx.2023.1.S1_at11/111+9824992..9825333hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_s_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_x_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17110OsAffx.20501.1.S1_at3/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17110OsAffx.21756.3.S1_x_at1/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2023.1.S1_at--840--411Chr01:9825279..9825303 (25 bp)
ATCATACTCAAAGTCACGGAAAGTA
LOC_Os01g17090
OsAffx.2023.1.S1_at--616--8911Chr01:9825266..9825290 (25 bp)
TCACGGAAAGTACCCCACCGAATAG
LOC_Os01g17090
OsAffx.2023.1.S1_at--920--1599Chr12:13456438..13456462 (25 bp)
AGCTGTTGGAGTGCACACTAACGCT
NONE
OsAffx.2023.1.S1_at--607--80311Chr12:13456445..13456469 (25 bp)
GGAGTGCACACTAACGCTGGTACAT
NONE
OsAffx.2023.1.S1_at--256--2611Chr01:9825213..9825237 (25 bp)
AACGCTGGTACATGCCCATATCAAG
LOC_Os01g17090
OsAffx.2023.1.S1_at--572--4551Chr01:9825200..9825224 (25 bp)
GCCCATATCAAGAAGCATTAAGCAA
LOC_Os01g17090
OsAffx.2023.1.S1_at--669--3012Chr07:7733213..7733237 (25 bp)
AATGCATCTCCTTGTATATCCATGG
NONE
OsAffx.2023.1.S1_at--249--2514Chr12:9127741..9127762 (22 bp)
ATATCCATGGATACTCGCATAAAGA
NONE
OsAffx.2023.1.S1_at--332--8231Chr01:9825079..9825103 (25 bp)
GGCAATGAGACCTATCATCGGCAAT
LOC_Os01g17090
OsAffx.2023.1.S1_at--861--471Chr01:9825063..9825087 (25 bp)
ATCGGCAATGTCTCTTTTAGACAAC
LOC_Os01g17090
OsAffx.2023.1.S1_at--1045--3598Chr10:17676628..17676651 (24 bp)
CATTGGCAGTCAACCAGGAGTTGAA
NONE
Target Sequence 
ATCATACTCAAAGTCACGGAAAGTACCCCACCGAATAGAGGGGAGCTAGCTGTTGGAGTGCACACTAACGCTGGTACATG
CCCATATCAAGAAGCATTAAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCATATGAAAAATG
CATCTCCTTGTATATCCATGGATACTCGCATAAAGAAATTGGCAATGAGACCTATCATCGGCAATGTCTCTTTTAGACAA
CAAAACTCATTGGCAGTCAACCAGGAGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis