Browse Element(s) Details


OsAffx.22179.1.S1_at

Description gb:NM_188114.1
DB_XREF= gi:34903311
TID=OsAffx.22179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1708011/11transposon protein, putative, Mutator sub-class
LOC_Os05g062006/11transposon protein, putative, Mutator sub-class
LOC_Os03g390101/11Possible lysine decarboxylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17070Os.50.3.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.2.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.3.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.1.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_x_at9/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_at7/111+9813599..9819528expressed protein
LOC_Os01g17080OsAffx.22179.1.S1_at11/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17080OsAffx.23752.1.S1_at5/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17090OsAffx.2023.1.S1_at11/111+9824992..9825333hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_s_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_x_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17110OsAffx.20501.1.S1_at3/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17110OsAffx.21756.3.S1_x_at1/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22179.1.S1_at--414--7032Chr05:3098803..3098827 (25 bp)
GTACATGTCTTGAATGGCAGCACAC
LOC_Os05g06200
OsAffx.22179.1.S1_at--793--8252Chr05:3098788..3098812 (25 bp)
GGCAGCACACTGGTAAGCCATGTCA
LOC_Os05g06200
OsAffx.22179.1.S1_at--848--10251Chr01:9821050..9821074 (25 bp)
TTTGTGCATAACTACTACTCGGTGA
LOC_Os01g17080
OsAffx.22179.1.S1_at--605--8413Chr03:21641624..21641714 (24 bp)
GGCCACAAGTTGACCTACCATTTTT
LOC_Os03g39010
OsAffx.22179.1.S1_at--854--9972Chr05:3098649..3098673 (25 bp)
TACCATTTTTAGTTGGTGCGCCTCT
LOC_Os05g06200
OsAffx.22179.1.S1_at--119--9172Chr05:3098633..3098657 (25 bp)
TGCGCCTCTTGCTAAATTACCTGTT
LOC_Os05g06200
OsAffx.22179.1.S1_at--227--6151Chr01:9820809..9820833 (25 bp)
GAGGTGACAATGATACTGCTCCAAC
LOC_Os01g17080
OsAffx.22179.1.S1_at--1144--391Chr01:9820762..9820786 (25 bp)
ATCAGAGGACCTATGACTTGCCAAA
LOC_Os01g17080
OsAffx.22179.1.S1_at--239--2712Chr05:3098409..3098433 (25 bp)
AAGCTAGTGCCAAGTGCCCACTCAA
LOC_Os05g06200
OsAffx.22179.1.S1_at--786--8651Chr01:9820563..9820587 (25 bp)
TGTGGCAGCAGAACCTAACACTCCA
LOC_Os01g17080
OsAffx.22179.1.S1_at--513--2451Chr01:9820547..9820571 (25 bp)
AACACTCCACGGAAGCCGACTAGAG
LOC_Os01g17080
Target Sequence 
GTACATGTCTTGAATGGCAGCACACTGGTAAGCCATGTCAACATGTATTGGCCTATGTAACCCGCCAACGGGGAGTTAAC
CTTGAACAGTTTGTGCATAACTACTACTCGGTGAATAGATTCAGGGCTGCTTATGGAAGAGAGATTGAGCCGATGACAGT
CAAAACTCAATGGCCACAAGTTGACCTACCATTTTTAGTTGGTGCGCCTCTTGCTAAATTACCTGTTGGAAGACGAAGGA
AACTAAGAAGGAAGGGATGGATGGAAGGTGGCCACAAGAAAAATGGTTCCAAAGATGGTCCATTTACCAATGAGAGTGAA
GGTGAGAAGGGAGGTGACAATGATACTGCTCCAACAAATGGAAAGGGAAAGAAGATGATCAGAGGACCTATGACTTGCCA
AAAATGCGGAGAAAAAGGCCACAGGCAAGCTAGTGCCAAGTGCCCACTCAATAGGACAGCAAAAAAGAGGAAGCGTAGGC
AACCTAGGAAGAATGTTACAAAAGCTGTGGCAGCAGAACCTAACACTCCACGGAAGCCGACTAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis