Browse Element(s) Details


Os.50.3.S1_x_at

Description gb:AU082107
DB_XREF= gi:6727442
DB_XREF=AU082107
CLONE=C1211
TID=Os.50.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1707011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17060Os.53230.1.S1_at11/111+9790737..9793607expressed protein
LOC_Os01g17060Os.46.1.A1_at8/111+9790737..9793607expressed protein
LOC_Os01g17060OsAffx.13299.1.S1_x_at2/111+9790737..9793607expressed protein
LOC_Os01g17070Os.50.3.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.2.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.3.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.1.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_x_at9/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_at7/111+9813599..9819528expressed protein
LOC_Os01g17080OsAffx.22179.1.S1_at11/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17080OsAffx.23752.1.S1_at5/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17090OsAffx.2023.1.S1_at11/111+9824992..9825333hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_s_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_x_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17110OsAffx.20501.1.S1_at3/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17110OsAffx.21756.3.S1_x_at1/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50.3.S1_x_at--129--671Chr01:9818256..9818280 (25 bp)
ATGACAATTAGGTGGCTGAGGGATC
LOC_Os01g17070
Os.50.3.S1_x_at--1104--7951Chr01:9818276..9818300 (25 bp)
GGATCACCCGCTGATATTGCTGGAA
LOC_Os01g17070
Os.50.3.S1_x_at--146--4211Chr01:9818352..9818493 (25 bp)
CCCCTGAGTTCGGTGCAATGTTGAT
LOC_Os01g17070
Os.50.3.S1_x_at--83--10171Chr01:9818754..9818778 (25 bp)
TATAACAGGTGACTTCCTTTTTCTT
LOC_Os01g17070
Os.50.3.S1_x_at--310--9251Chr01:9818768..9818792 (25 bp)
TCCTTTTTCTTTACTCCTGTAGACG
LOC_Os01g17070
Os.50.3.S1_x_at--392--10251Chr01:9818823..9818847 (25 bp)
TTTGTTCTCCTTTACATTCAACCCA
LOC_Os01g17070
Os.50.3.S1_x_at--3--2091Chr01:9818836..9818860 (25 bp)
ACATTCAACCCATTTCTTTGGCTAT
LOC_Os01g17070
Os.50.3.S1_x_at--347--191Chr01:9818847..9818871 (25 bp)
ATTTCTTTGGCTATACAGGTGGCCT
LOC_Os01g17070
Os.50.3.S1_x_at--869--9851Chr01:9818871..9818895 (25 bp)
TACACCGATCCCTAGCTATAAGGTC
LOC_Os01g17070
Os.50.3.S1_x_at--714--5031Chr01:9818936..9818960 (25 bp)
GCAGTTCATCTACGTGCATGCATGT
LOC_Os01g17070
Os.50.3.S1_x_at--37--10451Chr01:9818966..9818990 (25 bp)
TTAGGTCTGACCCACACAATTTGTC
LOC_Os01g17070
Target Sequence 
ATGACAATTAGGTGGCTGAGGGATCACCCGCTGATATTGCTGGAATATGTCAGGGTGATATTCTCATGAAATGTGGTGGG
AAATTCCTCTCTACTGCCCCTGAGTTCGGTGCAATGTTGATGGATAAATGCAAGGAAACTATGGAAGAGTATGACCAAGA
AACCAATGGTGATTTTTCAGCGAAAAGGATAACAGTTGAGATTGTTATAAAGCGAGAAAATGATGGAAGCACTATAGAGA
AAACTATATCTGCTGGTTTGATAGAAGAGTTTAACTATAACAGGTGACTTCCTTTTTCTTTACTCCTGTAGACGTAGGAG
TATTTTGTTTGTTGTTGATAAAATTTTGTTCTCCTTTACATTCAACCCATTTCTTTGGCTATACAGGTGGCCTACACCGA
TCCCTAGCTATAAGGTCAGACGAGATACTATTGGAAGGTGTTAAGAGCCTTAGAGGTGCAGTTCATCTACGTGCATGCAT
GTTATAATTAGGTCTGACCCACACAATTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis