Browse Element(s) Details


OsAffx.13299.1.S1_x_at

Description tigr:9631.m04045
TID=OsAffx.13299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4205010/11Importin-beta N-terminal domain containing protein, expressed
LOC_Os01g170602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42020Os.24860.1.S1_at11/113+23296127..23301619Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g42030OsAffx.13297.1.S1_at11/113+23305796..23306107hypothetical protein
LOC_Os03g42040OsAffx.13298.1.S1_at11/113+23307741..23314974HEAT repeat family protein
LOC_Os03g42050Os.46.1.A1_at11/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_x_at10/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_at8/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42060OsAffx.25481.1.S1_at10/113+23341345..23341987hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13299.1.S1_x_at--1035--2472Chr03:23325689..23325713 (25 bp)
AACACCTTCGTGCATATTGTCAGCA
LOC_Os03g42050
OsAffx.13299.1.S1_x_at--658--7112Chr03:23325671..23325695 (25 bp)
GTCAGCACTCTTGAATCTGGCTTAA
LOC_Os03g42050
OsAffx.13299.1.S1_x_at--1075--7452Chr03:23325046..23325070 (25 bp)
GTGTGCCTCTGCCATTGATAGCTTG
LOC_Os03g42050
OsAffx.13299.1.S1_x_at--41--1551Chr03:23325027..23325051 (25 bp)
AGCTTGGCAGCCTTTTATTTCAACA
LOC_Os03g42050
OsAffx.13299.1.S1_x_at--702--4752Chr03:23324970..23324994 (25 bp)
GCTGCACTAAATCTTGCTCGGCATA
LOC_Os03g42050
OsAffx.13299.1.S1_x_at--24--232Chr03:23324948..23324972 (25 bp)
ATATCGGAGAGTTCCCCACTTTATT
LOC_Os03g42050
OsAffx.13299.1.S1_x_at--771--4172Chr03:23324793..23324958 (25 bp)
CCCACTTTATTTCCTCAGATACTGA
LOC_Os03g42050
OsAffx.13299.1.S1_x_at--1095--11NONE
ATTGGCATCACAGCCTGTAGACCAG
NONE
OsAffx.13299.1.S1_x_at--123--8772Chr03:23323869..23323893 (25 bp)
TGTAGACCAGCAACAACGCCTTTCG
LOC_Os03g42050
OsAffx.13299.1.S1_x_at--174--1831Chr03:23323854..23323878 (25 bp)
ACGCCTTTCGCAATGCTTCGACAAG
LOC_Os03g42050
OsAffx.13299.1.S1_x_at--89--4751Chr03:23323830..23323854 (25 bp)
GCTGATGACTGATGTTGCTACGAAT
LOC_Os03g42050
Target Sequence 
AACACCTTCGTGCATATTGTCAGCACTCTTGAATCTGGCTTAAAAGGTCTAGATACAGGGATATCAACACAGTGTGCCTC
TGCCATTGATAGCTTGGCAGCCTTTTATTTCAACAATTTCACAGCTGCTGATGGCCCTCCTTCACCAGCTGCACTAAATC
TTGCTCGGCATATCGGAGAGTTCCCCACTTTATTTCCTCAGATACTGAAGACACTTTTTGAGATCATCATCTTTGAGGAT
GCGGGTAATCAGTGGAGTCTTAGTAGACCAATACTGAGTCTGATAATGATCAGTGAACAGATGTTTAGTAATTTGAGAGC
ACAGATATTGGCATCACAGCCTGTAGACCAGCAACAACGCCTTTCGCAATGCTTCGACAAGCTGATGACTGATGTTGCTA
CGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13299.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis