Browse Element(s) Details


Os.24860.1.S1_at

Description gb:AK071938.1
DB_XREF= gi:32981961
TID=Os.24860.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013083I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013083I02, full insert sequence.
FL= gb:AK065088.1 gb:AK071938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4202011/11Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41960Os.45173.1.S1_x_at6/113+23257839..23273135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41960OsAffx.8473.1.S1_x_at5/113+23257839..23273135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41960OsAffx.10632.1.S1_at1/113+23257839..23273135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41970NANA3+23274806..23275786hypothetical protein
LOC_Os03g41980NANA3+23276929..23283089retrotransposon protein, putative, unclassified
LOC_Os03g41990Os.28943.1.S1_x_at1/113+23283475..23286707retrotransposon protein, putative, unclassified
LOC_Os03g42000Os.47130.4.A1_x_at2/113+23287647..23287970retrotransposon protein, putative, unclassified
LOC_Os03g42010Os.9549.1.S1_at11/113+23289271..23295195DNA-directed polymerase kappa, putative, expressed
LOC_Os03g42010Os.54266.1.S1_at10/113+23289271..23295195DNA-directed polymerase kappa, putative, expressed
LOC_Os03g42020Os.24860.1.S1_at11/113+23296127..23301619Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g42030OsAffx.13297.1.S1_at11/113+23305796..23306107hypothetical protein
LOC_Os03g42040OsAffx.13298.1.S1_at11/113+23307741..23314974HEAT repeat family protein
LOC_Os03g42050Os.46.1.A1_at11/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_x_at10/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_at8/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005773cellular_componentvacuole
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0005262molecular_functioncalcium channel activity
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
GO:0015085molecular_functioncalcium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24860.1.S1_at--314--831Chr03:23301027..23301051 (25 bp)
ATGGCAGGGAACTCCATTTTCCTTG
LOC_Os03g42020
Os.24860.1.S1_at--1053--1211Chr03:23301079..23301103 (25 bp)
AGTTCATCCTAGTCCAGTTCCTGGG
LOC_Os03g42020
Os.24860.1.S1_at--1153--10651Chr03:23301096..23301120 (25 bp)
TTCCTGGGCGATTTCGCTAACACCA
LOC_Os03g42020
Os.24860.1.S1_at--525--1491Chr03:23301133..23301157 (25 bp)
AGCAACAGTGGCTCATCAGCATACT
LOC_Os03g42020
Os.24860.1.S1_at--388--331Chr03:23301153..23301177 (25 bp)
ATACTCTTCGGCTTCCTTGGGATGC
LOC_Os03g42020
Os.24860.1.S1_at--787--4771Chr03:23301183..23301207 (25 bp)
GCTGCTGCCATCAAGTTGATTGCTG
LOC_Os03g42020
Os.24860.1.S1_at--981--2651Chr03:23301223..23301247 (25 bp)
AAGCCGATACACGTAGAACGCCGTA
LOC_Os03g42020
Os.24860.1.S1_at--467--6891Chr03:23301302..23301326 (25 bp)
GTATACCTCCACTCTATGATCAAAG
LOC_Os03g42020
Os.24860.1.S1_at--636--8271Chr03:23301361..23301385 (25 bp)
TGGAGTTCCTGTTGGGTTTGGCCAA
LOC_Os03g42020
Os.24860.1.S1_at--277--6871Chr03:23301376..23301400 (25 bp)
GTTTGGCCAATCTAACCAGCCACGA
LOC_Os03g42020
Os.24860.1.S1_at--1061--151Chr03:23301466..23301490 (25 bp)
ATTATTTTGTACACGCTGATCTAGT
LOC_Os03g42020
Target Sequence 
ATGGCAGGGAACTCCATTTTCCTTGGTGTCCTCACCGGCACCATCTTCTTCCAGTTCATCCTAGTCCAGTTCCTGGGCGA
TTTCGCTAACACCACACCTCTGACCCAGCAACAGTGGCTCATCAGCATACTCTTCGGCTTCCTTGGGATGCCCATTGCTG
CTGCCATCAAGTTGATTGCTGTAGAACCTCATGAAAAAGCCGATACACGTAGAACGCCGTAAACCACACACACCAGGATA
AGACATTCAATCAATTTTGTGCACCAATAATCCAAGTATACCTCCACTCTATGATCAAAGATTGGCAGCATTTTGCGAAG
AAAATTTGATGCAATGGAGTTCCTGTTGGGTTTGGCCAATCTAACCAGCCACGAAACTGATGAGATAAGAGAGCCAATTA
GTGGTTCTGGGAATATGTAGAAGTGATTTTTTTTGAGGTATTATTTTGTACACGCTGATCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis