Browse Element(s) Details


OsAffx.13298.1.S1_at

Description tigr:9631.m04044
TID=OsAffx.13298.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical Protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4204011/11HEAT repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41980NANA3+23276929..23283089retrotransposon protein, putative, unclassified
LOC_Os03g41990Os.28943.1.S1_x_at1/113+23283475..23286707retrotransposon protein, putative, unclassified
LOC_Os03g42000Os.47130.4.A1_x_at2/113+23287647..23287970retrotransposon protein, putative, unclassified
LOC_Os03g42010Os.9549.1.S1_at11/113+23289271..23295195DNA-directed polymerase kappa, putative, expressed
LOC_Os03g42010Os.54266.1.S1_at10/113+23289271..23295195DNA-directed polymerase kappa, putative, expressed
LOC_Os03g42020Os.24860.1.S1_at11/113+23296127..23301619Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g42030OsAffx.13297.1.S1_at11/113+23305796..23306107hypothetical protein
LOC_Os03g42040OsAffx.13298.1.S1_at11/113+23307741..23314974HEAT repeat family protein
LOC_Os03g42050Os.46.1.A1_at11/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_x_at10/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_at8/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13298.1.S1_at--84--6431Chr03:23308316..23308340 (25 bp)
GATCTTGTACCCTCTGTTGAGTCTG
LOC_Os03g42040
OsAffx.13298.1.S1_at--124--9111Chr03:23308293..23308317 (25 bp)
TGCTGCAGGCTCCAAATTTGCTCTC
LOC_Os03g42040
OsAffx.13298.1.S1_at--847--10712Chr04:29206918..29206937 (20 bp)
TTGCTCTCAGTTTAGTTTCTGTCGT
NONE
OsAffx.13298.1.S1_at--1081--351Chr03:23308229..23308253 (25 bp)
ATAATGGGTCTTGGATGCCGCTGGT
LOC_Os03g42040
OsAffx.13298.1.S1_at--346--8951Chr03:23308173..23308197 (25 bp)
TGACTTTGGTGGGTCTTGCTTGCCA
LOC_Os03g42040
OsAffx.13298.1.S1_at--229--3331Chr03:23308150..23308174 (25 bp)
CACTATGGGTGGTTGCATTGGCCAA
LOC_Os03g42040
OsAffx.13298.1.S1_at--349--7391Chr03:23308069..23308093 (25 bp)
GTGAGGACTCACAGTCATCCAGAAA
LOC_Os03g42040
OsAffx.13298.1.S1_at--460--3151Chr03:23307999..23308023 (25 bp)
AATTCTTGATTCTGTGGCTGGCGTC
LOC_Os03g42040
OsAffx.13298.1.S1_at--150--1191Chr03:23307937..23307961 (25 bp)
AGTACGGTGTTGTCTTGGGCTTGAC
LOC_Os03g42040
OsAffx.13298.1.S1_at--355--2171Chr03:23307914..23307938 (25 bp)
ACACGCTTTGTCTGTGTCAGGTTGC
LOC_Os03g42040
OsAffx.13298.1.S1_at--669--2691Chr03:23307863..23307887 (25 bp)
AAGCTGCATCTTGCTCATGATTCAC
LOC_Os03g42040
Target Sequence 
GATCTTGTACCCTCTGTTGAGTCTGCTGCAGGCTCCAAATTTGCTCTCAGTTTAGTTTCTGTCGTAAAGCAGTGGCTACC
AGTTGTCATAATGGGTCTTGGATGCCGCTGGTTGATTGGGCCACAGGCTGAGGGTAACATGTGTGACTTTGGTGGGTCTT
GCTTGCCACTATGGGTGGTTGCATTGGCCAAGAATGAGCTGCTTGATGATGAAAAACCTAGAGATGATGATCAAAGCGAG
CAGGCCAGTGAGGACTCACAGTCATCCAGAAAACTAGCAGAAATGATGGTAATTCTTCTGAAGAAAGGGAGCCCGAAAAT
TCTTGATTCTGTGGCTGGCGTCTTCCTGTCCACCCTCAAGTTGGCGCTGCAGAGAGCGGAGTACGGTGTTGTCTTGGGCT
TGACACGCTTTGTCTGTGTCAGGTTGCTTGGGAGTGACTCCTCGGCATCGGAGAAGCTGCATCTTGCTCATGATTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis