Browse Element(s) Details


OsAffx.13297.1.S1_at

Description tigr:9631.m04043
TID=OsAffx.13297.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4203011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41980NANA3+23276929..23283089retrotransposon protein, putative, unclassified
LOC_Os03g41990Os.28943.1.S1_x_at1/113+23283475..23286707retrotransposon protein, putative, unclassified
LOC_Os03g42000Os.47130.4.A1_x_at2/113+23287647..23287970retrotransposon protein, putative, unclassified
LOC_Os03g42010Os.9549.1.S1_at11/113+23289271..23295195DNA-directed polymerase kappa, putative, expressed
LOC_Os03g42010Os.54266.1.S1_at10/113+23289271..23295195DNA-directed polymerase kappa, putative, expressed
LOC_Os03g42020Os.24860.1.S1_at11/113+23296127..23301619Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g42030OsAffx.13297.1.S1_at11/113+23305796..23306107hypothetical protein
LOC_Os03g42040OsAffx.13298.1.S1_at11/113+23307741..23314974HEAT repeat family protein
LOC_Os03g42050Os.46.1.A1_at11/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_x_at10/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_at8/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13297.1.S1_at--1152--6251Chr03:23305828..23305852 (25 bp)
GATGGGCTGCACTGTGGACACCAAT
LOC_Os03g42030
OsAffx.13297.1.S1_at--697--1951Chr03:23305838..23305862 (25 bp)
ACTGTGGACACCAATCTAGTCGTCA
LOC_Os03g42030
OsAffx.13297.1.S1_at--891--9611Chr03:23305860..23305884 (25 bp)
TCATGACTCATGACGTGGCCGTGGA
LOC_Os03g42030
OsAffx.13297.1.S1_at--595--4491Chr03:23305877..23305901 (25 bp)
GCCGTGGACTGGTTGTCGATCGAAT
LOC_Os03g42030
OsAffx.13297.1.S1_at--57--6631Chr03:23305888..23305912 (25 bp)
GTTGTCGATCGAATCGTCGCCGTCG
LOC_Os03g42030
OsAffx.13297.1.S1_at--546--1231Chr03:23305919..23305943 (25 bp)
AGTTGCCGACGGATCACGCTGCCGA
LOC_Os03g42030
OsAffx.13297.1.S1_at--1109--1831Chr03:23305934..23305958 (25 bp)
ACGCTGCCGAAAATCCTCGATGGAT
LOC_Os03g42030
OsAffx.13297.1.S1_at--887--8212Chr11:15321869..15321893 (25 bp)
GGAATTGATCAAGCCACCCGCAGGT
NONE
OsAffx.13297.1.S1_at--815--3472Chr11:15321889..15321913 (25 bp)
CAGGTGGACGAACTGCATTGCCGCC
NONE
OsAffx.13297.1.S1_at--311--9071Chr03:23306041..23306065 (25 bp)
TGCATTGCCGCCGAGGCCGTATGAT
LOC_Os03g42030
OsAffx.13297.1.S1_at--164--6231Chr03:23306053..23306077 (25 bp)
GAGGCCGTATGATTCGATGGATCAC
LOC_Os03g42030
Target Sequence 
GATGGGCTGCACTGTGGACACCAATCTAGTCGTCATGACTCATGACGTGGCCGTGGACTGGTTGTCGATCGAATCGTCGC
CGTCGATGCCGAGTTGCCGACGGATCACGCTGCCGAAAATCCTCGATGGATCTAGAAGAAAAGGAGAAAACAGGATGGAC
ATACCAGAATCAATCACCTGGGAATTGATCAAGCCACCCGCAGGTGGACGAACTGCATTGCCGCCGAGGCCGTATGATTC
GATGGATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis