Browse Element(s) Details


OsAffx.25481.1.S1_at

Description tigr:9631.m04046
TID=OsAffx.25481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4206010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42050Os.46.1.A1_at11/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_x_at10/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_at8/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42060OsAffx.25481.1.S1_at10/113+23341345..23341987hypothetical protein
LOC_Os03g42070Os.17403.1.S1_a_at11/113+23364503..23367047Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25481.1.S1_at--1051--5411Chr03:23341829..23341853 (25 bp)
GAAGCCGGCAGTGAGCGCTCACAGA
LOC_Os03g42060
OsAffx.25481.1.S1_at--62--1691Chr03:23341827..23341851 (25 bp)
AGCCGGCAGTGAGCGCTCACAGAGA
LOC_Os03g42060
OsAffx.25481.1.S1_at--285--7232Chr12:1486696..1486820 (25 bp)
TGGGCCGTTGGGATTCGCCGAAATA
NONE
OsAffx.25481.1.S1_at--942--4491Chr12:1486693..1486714 (22 bp)
GCCGTTGGGATTCGCCGAAATACCA
NONE
OsAffx.25481.1.S1_at--426--10851Chr03:23341429..23341453 (25 bp)
TTGGGATTCGCCGAAATACCACTCT
LOC_Os03g42060
OsAffx.25481.1.S1_at--308--7933Chr11:21379069..21379314 (25 bp)
GGATTCGCCGAAATACCACTCTCAA
NONE
OsAffx.25481.1.S1_at--762--9332Chr12:1486214..1486706 (25 bp)
TCGCCGAAATACCACTCTCAATTGA
NONE
OsAffx.25481.1.S1_at--1025--4211Chr03:23341419..23341443 (25 bp)
CCGAAATACCACTCTCAATTGAGGG
LOC_Os03g42060
OsAffx.25481.1.S1_at--992--7571Chr03:23341396..23341420 (25 bp)
GGGCTTCGCCGAAATACCATTTTCT
LOC_Os03g42060
OsAffx.25481.1.S1_at--1028--4891Chr03:23341394..23341418 (25 bp)
GCTTCGCCGAAATACCATTTTCTTT
LOC_Os03g42060
OsAffx.25481.1.S1_at--189--10311Chr03:23341376..23341400 (25 bp)
TTTCTTTTGATTCTCCCTTTCCTCG
LOC_Os03g42060
Target Sequence 
GAAGCCGGCAGTGAGCGCTCACAGAGAGGGAGGAGGTGGGGCCAGCGAGGGAGGCGGGGAGGCTGGCGGCGAGCGACGGA
GAGGGAGGAGGCTGGGCCGTTGGGATTCGCCGAAATACCACTCTCAATTGAGGGGCTTCGCCGAAATACCATTTTCTTTT
GATTCTCCCTTTCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis