Browse Element(s) Details


Os.53230.1.S1_at

Description gb:AK071473.1
DB_XREF= gi:32981496
TID=Os.53230.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098B17, full insert sequence.
FL= gb:AK071473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1706011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17050OsAffx.22181.1.S1_s_at11/111+9766796..9767815VQ motif family protein, expressed
LOC_Os01g17060Os.53230.1.S1_at11/111+9790737..9793607expressed protein
LOC_Os01g17060Os.46.1.A1_at8/111+9790737..9793607expressed protein
LOC_Os01g17060OsAffx.13299.1.S1_x_at2/111+9790737..9793607expressed protein
LOC_Os01g17070Os.50.3.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.2.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.3.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.1.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_x_at9/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_at7/111+9813599..9819528expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53230.1.S1_at--579--9771Chr01:9791802..9791826 (25 bp)
TAATGTACGTCTTGTTTGCAGCCTG
LOC_Os01g17060
Os.53230.1.S1_at--437--6751Chr01:9791626..9791650 (25 bp)
GTTCAGGACCAGCTACCAGCTTTAA
LOC_Os01g17060
Os.53230.1.S1_at--290--3592Chr07:3396160..3396184 (24 bp)
CATTTTTCTTTTGGAGGTGCTGTCC
NONE
Os.53230.1.S1_at--462--4731Chr01:9790968..9790992 (25 bp)
GCTGTCCAGAGTTTTGGAGCTCGAC
LOC_Os01g17060
Os.53230.1.S1_at--1063--4431Chr01:9790940..9790964 (25 bp)
GCCTTTTGCCTATGGACCTATGGAA
LOC_Os01g17060
Os.53230.1.S1_at--683--9571Chr01:9790902..9790926 (25 bp)
TCTTGCCCACGGTATTTGTTGATTA
LOC_Os01g17060
Os.53230.1.S1_at--370--6731Chr01:9790872..9790896 (25 bp)
GTTCTTTAGTCTTCTTCAGAGTTCA
LOC_Os01g17060
Os.53230.1.S1_at--457--1251Chr01:9790839..9790863 (25 bp)
AGATTGTCTGATTTTCCACTTGCTC
LOC_Os01g17060
Os.53230.1.S1_at--423--8611Chr01:9790783..9790807 (25 bp)
TGGGTTTCTGTTCTGGTTTCCTTGG
LOC_Os01g17060
Os.53230.1.S1_at--413--6851Chr01:9790768..9790792 (25 bp)
GTTTCCTTGGTTTGACACTATTCAG
LOC_Os01g17060
Os.53230.1.S1_at--1031--3452Chr09:1603200..1603684 (25 bp)
CAGGTTACTATTCTTGATTGGTTTC
NONE
Target Sequence 
TAATGTACGTCTTGTTTGCAGCCTGTAGACCAGCAACAACGCCTTTCGCAATGCTTCGAGAAGCTGATGTCTGATGTTGC
TAGGAACTTGGAACCAAAGAACAGAGATAAATTCACTAAAAATCTTACAACATTCAGGCATGATTTCCGTGTGAAGAACA
TTCAGGCATGACAGCTGTTCAGGACCAGCTACCAGCTTTAAGGTTAGAAGAATAGAAAAAAAGTTGTAAATGGTTGTGCT
TCCTGTTGCTGTCAATGCTCAAATTGGAAGTGAGGAGACGGTAAATTTGCTCCTTGAGCTTCAATACAGCATTTTTCTTT
TGGAGGTGCTGTCCAGAGTTTTGGAGCTCGACGGCGCCTTTTGCCTATGGACCTATGGAAGGCAGTTCTTCAGTCTTGCC
CACGGTATTTGTTGATTAATCTTGTTCTTTAGTCTTCTTCAGAGTTCAGATTGTTTAGATTGTCTGATTTTCCACTTGCT
CTTAAGATGTATTATAGGTTAATATAGCTAGTTGGGTTTCTGTTCTGGTTTCCTTGGTTTGACACTATTCAGGTTACTAT
TCTTGATTGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis