Browse Element(s) Details


OsAffx.22745.1.S1_x_at

Description gb:NM_184578.1
DB_XREF= gi:34896245
GEN=OSJNBb0008D07.13
TID=OsAffx.22745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0008D07.13 (OSJNBb0008D07.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g223905/11hypothetical protein
LOC_Os11g282001/11expressed protein
LOC_Os09g164701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22350Os.52820.1.S1_at11/1111+12331607..12337853ABC transporter family protein, putative, expressed
LOC_Os11g22360OsAffx.31088.1.S1_at11/1111+12338548..12339882hypothetical protein
LOC_Os11g22360OsAffx.4423.1.S1_x_at2/1111+12338548..12339882hypothetical protein
LOC_Os11g22370OsAffx.19542.3.S1_x_at7/1111+12344053..12348280retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g22380OsAffx.31089.1.S1_at11/1111+12355575..12356021hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_at8/1111+12358320..12360781hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_x_at5/1111+12358320..12360781hypothetical protein
LOC_Os11g22404Os.53036.1.S1_at10/1111+12374660..12381558protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22745.1.S1_x_at--501--8291Chr01:16646015..16646039 (25 bp)
GGCTTGCTCATTGCTACCAGAACGC
NONE
OsAffx.22745.1.S1_x_at--385--76Chr11:9867327..9867350 (24 bp)
ATTGCTACCAGAACGCGCTCTACTC
NONE
OsAffx.22745.1.S1_x_at--1145--1434Chr12:10809466..10809487 (22 bp)
AGAACGCGCTCTACTCCGTACCTGG
NONE
OsAffx.22745.1.S1_x_at--188--3813Chr11:15705908..15705928 (21 bp)
CTCCGTACCTGGACAGGGAGGACTA
LOC_Os11g28200
OsAffx.22745.1.S1_x_at--231--5711Chr01:16645964..16645988 (25 bp)
GACTACGGTGATCTCAAGAGCTGTG
NONE
OsAffx.22745.1.S1_x_at--128--8851Chr01:16645956..16645980 (25 bp)
TGATCTCAAGAGCTGTGGACACCCC
NONE
OsAffx.22745.1.S1_x_at--732--13725Chr11:12360697..12360717 (21 bp)
AGAGCTGTGGACACCCCGAGTATTA
LOC_Os11g22390
OsAffx.22745.1.S1_x_at--39--75122Chr11:12360699..12360723 (25 bp)
GTGGACACCCCGAGTATTATACCAT
LOC_Os11g22390
OsAffx.22745.1.S1_x_at--14--60924Chr11:12360710..12360734 (25 bp)
GAGTATTATACCATCCAGTGTCCAA
LOC_Os11g22390
OsAffx.22745.1.S1_x_at--1137--68724Chr11:12360712..12360736 (25 bp)
GTATTATACCATCCAGTGTCCAACG
LOC_Os11g22390
OsAffx.22745.1.S1_x_at--155--104122Chr11:12360715..12360739 (25 bp)
TTATACCATCCAGTGTCCAACGCGA
LOC_Os11g22390
Target Sequence 
GGCTTGCTCATTGCTACCAGAACGCGCTCTACTCCGTACCTGGACAGGGAGGACTACGGTGATCTCAAGAGCTGTGGACA
CCCCGAGTATTATACCATCCAGTGTCCAACGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22745.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis