Browse Element(s) Details


OsAffx.31088.1.S1_at

Description tigr:9639.m02008
TID=OsAffx.31088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2236011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22320NANA11+12314433..12315145retrotransposon, putative, centromere-specific
LOC_Os11g22330NANA11+12318317..12321514hypothetical protein
LOC_Os11g22336OsAffx.22699.1.S1_x_at1/1111+12321851..12325608retrotransposon protein, putative, unclassified
LOC_Os11g22336Os.52731.1.S1_at1/1111+12321851..12325608retrotransposon protein, putative, unclassified
LOC_Os11g22342NANA11+12326206..12328086retrotransposon protein, putative, unclassified
LOC_Os11g22350Os.52820.1.S1_at11/1111+12331607..12337853ABC transporter family protein, putative, expressed
LOC_Os11g22360OsAffx.31088.1.S1_at11/1111+12338548..12339882hypothetical protein
LOC_Os11g22360OsAffx.4423.1.S1_x_at2/1111+12338548..12339882hypothetical protein
LOC_Os11g22370OsAffx.19542.3.S1_x_at7/1111+12344053..12348280retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g22380OsAffx.31089.1.S1_at11/1111+12355575..12356021hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_at8/1111+12358320..12360781hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_x_at5/1111+12358320..12360781hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31088.1.S1_at--897--4573Chr04:25337108..25337133 (25 bp)
GCGCATGTCCCGACCTTGCGGGCTG
NONE
OsAffx.31088.1.S1_at--1092--1151Chr11:12339403..12339427 (25 bp)
AGTCAGTCGCCCTCGTCACGCTGGG
LOC_Os11g22360
OsAffx.31088.1.S1_at--405--8251Chr11:12338886..12338910 (25 bp)
GGCACTGCCTGCAAGAGGGCTACAG
LOC_Os11g22360
OsAffx.31088.1.S1_at--352--1991Chr11:12338883..12338907 (25 bp)
ACTGCCTGCAAGAGGGCTACAGCGT
LOC_Os11g22360
OsAffx.31088.1.S1_at--635--3851Chr11:12338878..12338902 (25 bp)
CTGCAAGAGGGCTACAGCGTGCGCT
LOC_Os11g22360
OsAffx.31088.1.S1_at--519--2791Chr11:12338874..12338898 (25 bp)
AAGAGGGCTACAGCGTGCGCTGCTT
LOC_Os11g22360
OsAffx.31088.1.S1_at--297--9311Chr11:12338672..12338696 (25 bp)
TCCCCTGTCGCCAGGTGGAGAGGAT
LOC_Os11g22360
OsAffx.31088.1.S1_at--681--4191Chr11:12338670..12338694 (25 bp)
CCCTGTCGCCAGGTGGAGAGGATCA
LOC_Os11g22360
OsAffx.31088.1.S1_at--195--331Chr11:12338615..12338639 (25 bp)
ATAAGAGGCTAACGTGTGGGACCCA
LOC_Os11g22360
OsAffx.31088.1.S1_at--274--1291Chr11:12338612..12338636 (25 bp)
AGAGGCTAACGTGTGGGACCCACAC
LOC_Os11g22360
OsAffx.31088.1.S1_at--430--9811Chr11:12338606..12338630 (25 bp)
TAACGTGTGGGACCCACACTGAGTC
LOC_Os11g22360
Target Sequence 
GCGCATGTCCCGACCTTGCGGGCTGCCACGGTGGCGTCGCCCCTCCAGTCAGTCGCCCTCGTCACGCTGGGGCCTTCCAC
GCCGGCGCCGGGTGCCCGTGGCGGCGACAATGGCGGTGGAGGGAGGAAGCGGAAGGGCGTGGTGGCCGGACCGCGACCTC
TGCGCCAGGGCAGCGCTGTGCGCGAGCGGCGTCGCTGGGACACGTGGACGCGCTCCGGGAGCTCGGGCACTGCCTGCAAG
AGGGCTACAGCGTGCGCTGCTTCGTGCTCGACGGTCAGTCGCCGCCTCCTCATCCAGGCCAACGCCCGTGAGCTCGCCGC
CACGGTCATCGCGTCGGCCTCGCTCCTCCACGCCACCGACAAGCTGGCTGCCTCCCGCGTGGCACTCGTGCCTCCTCTGC
GACTTCGGCTGCCACGCCGCGGCGAACGCACCCAGCTGCTCCCCTGTCGCCAGGTGGAGAGGATCAGAGGAGAGGAGAGA
GGTGGAGGGGGGAGGAATAAGAGGCTAACGTGTGGGACCCACACTGAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis