Browse Element(s) Details


OsAffx.4423.1.S1_x_at

Description tigr:9633.m02265
TID=OsAffx.4423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g223602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22320NANA11+12314433..12315145retrotransposon, putative, centromere-specific
LOC_Os11g22330NANA11+12318317..12321514hypothetical protein
LOC_Os11g22336OsAffx.22699.1.S1_x_at1/1111+12321851..12325608retrotransposon protein, putative, unclassified
LOC_Os11g22336Os.52731.1.S1_at1/1111+12321851..12325608retrotransposon protein, putative, unclassified
LOC_Os11g22342NANA11+12326206..12328086retrotransposon protein, putative, unclassified
LOC_Os11g22350Os.52820.1.S1_at11/1111+12331607..12337853ABC transporter family protein, putative, expressed
LOC_Os11g22360OsAffx.31088.1.S1_at11/1111+12338548..12339882hypothetical protein
LOC_Os11g22360OsAffx.4423.1.S1_x_at2/1111+12338548..12339882hypothetical protein
LOC_Os11g22370OsAffx.19542.3.S1_x_at7/1111+12344053..12348280retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g22380OsAffx.31089.1.S1_at11/1111+12355575..12356021hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_at8/1111+12358320..12360781hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_x_at5/1111+12358320..12360781hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4423.1.S1_x_at--746--4131Chr05:14531879..14531902 (24 bp)
CGCTCCTCAAGGTTGCCGCGGACGG
NONE
OsAffx.4423.1.S1_x_at--991--7591Chr05:14531855..14531879 (25 bp)
GGGCACTAGATCAATGACTGGCGAC
NONE
OsAffx.4423.1.S1_x_at--166--5111Chr05:14531853..14531877 (25 bp)
GCACTAGATCAATGACTGGCGACTA
NONE
OsAffx.4423.1.S1_x_at--246--691Chr05:14531842..14531866 (25 bp)
ATGACTGGCGACTACCGCGCGACGA
NONE
OsAffx.4423.1.S1_x_at--16--8951Chr05:14531841..14531865 (25 bp)
TGACTGGCGACTACCGCGCGACGAT
NONE
OsAffx.4423.1.S1_x_at--979--4091Chr05:14531834..14531858 (25 bp)
CGACTACCGCGCGACGATGGTCAGG
NONE
OsAffx.4423.1.S1_x_at--349--2031Chr05:14531832..14531856 (25 bp)
ACTACCGCGCGACGATGGTCAGGGA
NONE
OsAffx.4423.1.S1_x_at--869--1873Chr11:12339490..12339514 (25 bp)
ACGATGGTCAGGGAGTCCTTGGCCT
LOC_Os11g22360
OsAffx.4423.1.S1_x_at--418--9633Chr11:12339486..12339507 (22 bp)
TCAGGGAGTCCTTGGCCTCCACGCG
LOC_Os11g22360
OsAffx.4423.1.S1_x_at--1094--4331Chr05:14531685..14531709 (25 bp)
CCATGGCCGCACGTGGAAAGACGAC
NONE
OsAffx.4423.1.S1_x_at--847--3491Chr05:14531684..14531708 (25 bp)
CATGGCCGCACGTGGAAAGACGACG
NONE
Target Sequence 
CGCTCCTCAAGGTTGCCGCGGACGGGGCACTAGATCAATGACTGGCGACTACCGCGCGACGATGGTCAGGGAGTCCTTGG
CCTCCACGCGTGGGGGAGACCCTCCTGCTCCGGCGGCGTGGGAGGGCAGGCGCGGGAGGACGAGGCGGAGGCGGATGGCG
CCAACGGGGAGAGGGAGGTCGTCGCCGTCGTCATCCATGGCCGCACGTGGAAAGACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4423.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis