Browse Element(s) Details


Os.52820.1.S1_at

Description gb:AK069444.1
DB_XREF= gi:32979468
TID=Os.52820.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025A20, full insert sequence.
FL= gb:AK069444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2235011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22300NANA11+12300905..12307042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22310Os.46995.1.S1_x_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310OsAffx.25367.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310Os.46995.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310OsAffx.20628.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22320NANA11+12314433..12315145retrotransposon, putative, centromere-specific
LOC_Os11g22330NANA11+12318317..12321514hypothetical protein
LOC_Os11g22336OsAffx.22699.1.S1_x_at1/1111+12321851..12325608retrotransposon protein, putative, unclassified
LOC_Os11g22336Os.52731.1.S1_at1/1111+12321851..12325608retrotransposon protein, putative, unclassified
LOC_Os11g22342NANA11+12326206..12328086retrotransposon protein, putative, unclassified
LOC_Os11g22350Os.52820.1.S1_at11/1111+12331607..12337853ABC transporter family protein, putative, expressed
LOC_Os11g22360OsAffx.31088.1.S1_at11/1111+12338548..12339882hypothetical protein
LOC_Os11g22360OsAffx.4423.1.S1_x_at2/1111+12338548..12339882hypothetical protein
LOC_Os11g22370OsAffx.19542.3.S1_x_at7/1111+12344053..12348280retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g22380OsAffx.31089.1.S1_at11/1111+12355575..12356021hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_at8/1111+12358320..12360781hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_x_at5/1111+12358320..12360781hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52820.1.S1_at--892--1691Chr11:12332346..12332365 (20 bp)
AGCCAGGCTCTGCACAGTTGTGGTC
LOC_Os11g22350
Os.52820.1.S1_at--401--4911Chr11:12332191..12332215 (25 bp)
GCTTCCGGTCGTTTTGACTCTGATA
LOC_Os11g22350
Os.52820.1.S1_at--555--1431Chr11:12332153..12332177 (25 bp)
AGAACACTTTCTTTGCTGACCTGTG
LOC_Os11g22350
Os.52820.1.S1_at--815--2171Chr11:12331951..12331975 (25 bp)
ACACGGTGCGGTTCGCTGGTCAAGA
LOC_Os11g22350
Os.52820.1.S1_at--103--911Chr11:12331905..12331929 (25 bp)
AGGCTCTTTGCATAGTGGTTCTTAT
LOC_Os11g22350
Os.52820.1.S1_at--637--2971Chr11:12331876..12331900 (25 bp)
AATGGTATAGTTTTCCGCTGCGTGG
LOC_Os11g22350
Os.52820.1.S1_at--129--4671Chr11:12331857..12331881 (25 bp)
GCGTGGCATTCTTCTGCATGGTGAC
LOC_Os11g22350
Os.52820.1.S1_at--1052--4991Chr11:12331842..12331866 (25 bp)
GCATGGTGACCTTCCAGAAGCACTA
LOC_Os11g22350
Os.52820.1.S1_at--208--5391Chr11:12331826..12331850 (25 bp)
GAAGCACTAGAATCGTCCATGACAA
LOC_Os11g22350
Os.52820.1.S1_at--93--371Chr11:12331786..12331810 (25 bp)
ATAATTCTCCTTCTTTGTCTATCCA
LOC_Os11g22350
Os.52820.1.S1_at--197--9871Chr11:12331717..12331741 (25 bp)
TACATTATAACCTCTTCTGTCGGGC
LOC_Os11g22350
Target Sequence 
AGCCAGGCTCTGCACAGTTGTGGTCTGCGCTGCTTCCGGTCGTTTTGACTCTGATAGCAACTCAGCGGAAGAACACTTTC
TTTGCTGACCTGTGCTACACAAAGTGGGCTCTAGAAGGGTTTGTGATGGCAAATGCTCAAAACTACTCCGGGGTGTGGCT
GATTACACGGTGCGGTTCGCTGGTCAAGAGCGGCTATGACATCAACGACAAGGCTCTTTGCATAGTGGTTCTTATTGCCA
ATGGTATAGTTTTCCGCTGCGTGGCATTCTTCTGCATGGTGACCTTCCAGAAGCACTAGAATCGTCCATGACAAGAGAAA
AACAACCCCATAATTCTCCTTCTTTGTCTATCCATGTAGCTGATACGTTCATTCATTGATTTATGTGCAATAGAAATGTA
CATTATAACCTCTTCTGTCGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis