Browse Element(s) Details


Os.53036.1.S1_at

Description gb:AK070536.1
DB_XREF= gi:32980560
TID=Os.53036.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023060C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060C16, full insert sequence.
FL= gb:AK070536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2240410/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22380OsAffx.31089.1.S1_at11/1111+12355575..12356021hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_at8/1111+12358320..12360781hypothetical protein
LOC_Os11g22390OsAffx.22745.1.S1_x_at5/1111+12358320..12360781hypothetical protein
LOC_Os11g22404Os.53036.1.S1_at10/1111+12374660..12381558protein phosphatase 2C, putative, expressed
LOC_Os11g22420OsAffx.15648.1.S1_at1/1111+12389148..12392451hypothetical protein
LOC_Os11g22430NANA11+12395546..12402572retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22440NANA11+12406105..12408681retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53036.1.S1_at--807--4871NONE
GCTATATTAGCATGCCCGGTGAGCT
NONE
Os.53036.1.S1_at--112--9311Chr11:12381090..12381114 (25 bp)
TCCCGTTCTGATCCAGCTTACGATA
LOC_Os11g22404
Os.53036.1.S1_at--193--10371Chr11:12381142..12381166 (25 bp)
TTTTTCATCCTAACTCCCATTTGGT
LOC_Os11g22404
Os.53036.1.S1_at--796--10451Chr11:12381180..12381204 (25 bp)
TTACGCAGCAAGCATTTGGAGTCTT
LOC_Os11g22404
Os.53036.1.S1_at--964--2631Chr11:12381232..12381256 (25 bp)
AACCTTTTTGTATAGCTGCTCATCG
LOC_Os11g22404
Os.53036.1.S1_at--76--1611Chr11:12381245..12381269 (25 bp)
AGCTGCTCATCGATTTTCTGTCTTA
LOC_Os11g22404
Os.53036.1.S1_at--263--8151Chr11:12381295..12381319 (25 bp)
GGACAAATCCTACTCATTCTTATGG
LOC_Os11g22404
Os.53036.1.S1_at--961--5631Chr11:12381341..12381365 (25 bp)
GACAGTTGGAACCTTTTGCTCAAAA
LOC_Os11g22404
Os.53036.1.S1_at--175--9071Chr11:12381357..12381381 (25 bp)
TGCTCAAAAGGTTCGTATGCGTTTC
LOC_Os11g22404
Os.53036.1.S1_at--867--6711Chr11:12381394..12381418 (25 bp)
GTTCGTATGCTCTAGTCGCATGCAA
LOC_Os11g22404
Os.53036.1.S1_at--528--9751Chr11:12381524..12381548 (25 bp)
TAATACAAGAGACACCTTCCACCTA
LOC_Os11g22404
Target Sequence 
GCTATATTAGCATGCCCGGTGAGCTCCCGTTCTGATCCAGCTTACGATAGCTAAGAATGAGTAGGGTTGTTTTTTTTTTT
CATCCTAACTCCCATTTGGTTACGAGTTGACAATTACGCAGCAAGCATTTGGAGTCTTAACTCTTATTTAGTCGAGAGTA
GACTTAACCTTTTTGTATAGCTGCTCATCGATTTTCTGTCTTATTGTATGTACTTGGCGATTATATGTGGACAAATCCTA
CTCATTCTTATGGTAATTTCGTTTGTCGGATTATGACAGTTGGAACCTTTTGCTCAAAAGGTTCGTATGCGTTTCTAAAA
AAAGGGGGTTCGTATGCTCTAGTCGCATGCAACTATGCAAGCCGGAGAAGGTCTAAAAGGCCAACGATAGGGGTAAAGGA
TAAATTCCTTATATATGAAACGGATGTAATTACACAGCTAGTTCTAGCTGGTTTGTCTAATACAAGAGACACCTTCCACC
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis