Browse Element(s) Details

Os.57412.1.S1_at

Description

gb:AK111486.1
DB_XREF= gi:32996699
TID=Os.57412.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-G06, full insert sequence.
FL= gb:AK111486.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g27760	10/11	Peptide methionine sulfoxide reductase msrB, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g27720	OsAffx.9996.1.S1_x_at	3/11	6	+	15694778..15701915	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27720	OsAffx.23450.1.S1_at	1/11	6	+	15694778..15701915	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27720	OsAffx.21269.1.S1_x_at	1/11	6	+	15694778..15701915	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27720	OsAffx.31761.1.S1_at	1/11	6	+	15694778..15701915	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27730	NA	NA	6	+	15703878..15705912	retrotransposon protein, putative, unclassified
LOC_Os06g27740	OsAffx.4378.1.S1_x_at	2/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27740	Os.20851.1.A1_x_at	2/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27740	OsAffx.25778.2.S1_at	1/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27740	OsAffx.15695.1.S1_x_at	1/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27750	NA	NA	6	+	15716182..15717302	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27760	Os.36369.1.S1_at	11/11	6	+	15717526..15720269	Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os06g27760	Os.57412.1.S1_at	10/11	6	+	15717526..15720269	Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os06g27770	Os.15988.1.S1_at	11/11	6	+	15723708..15726432	Isoflavone reductase homolog, putative, expressed
LOC_Os06g27780	NA	NA	6	+	15730436..15731075	transposon protein, putative, unclassified
LOC_Os06g27790	Os.24588.1.S1_at	11/11	6	+	15732747..15736720	Selenium-binding protein, putative, expressed
LOC_Os06g27800	Os.48168.1.S1_at	11/11	6	+	15737396..15743796	Uncharacterised protein family containing protein, expressed
LOC_Os06g27800	Os.48168.1.S2_at	10/11	6	+	15737396..15743796	Uncharacterised protein family containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.57412.1.S1_at--498--455	1	Chr06:15719980..15720004 (25 bp)	GCCCAAGGTGCCGTGTGGTGCTTCA	LOC_Os06g27760
Os.57412.1.S1_at--863--951	1	Chr06:15719952..15719976 (25 bp)	TCTAACTTCTTTACCTACCTAGTGG	LOC_Os06g27760
Os.57412.1.S1_at--732--1005	1	Chr06:15719933..15719957 (25 bp)	TAGTGGGAGCCCGTTGTTGCCTGCT	LOC_Os06g27760
Os.57412.1.S1_at--389--669	1	Chr06:15719918..15719942 (25 bp)	GTTGCCTGCTTCCTTTGGATGCAAG	LOC_Os06g27760
Os.57412.1.S1_at--735--233	1	Chr06:15719799..15719823 (25 bp)	AAAGATCTGCTGTAGGCCGTTTCTA	LOC_Os06g27760
Os.57412.1.S1_at--96--843	1	Chr06:15719785..15719809 (25 bp)	GGCCGTTTCTATGTCTAATTCTTTC	LOC_Os06g27760
Os.57412.1.S1_at--262--11	1	Chr06:15719723..15719747 (25 bp)	ATTCGGGAGTGAAGCCCCTATTGCC	LOC_Os06g27760
Os.57412.1.S1_at--987--1021	1	Chr06:15719705..15719729 (25 bp)	TATTGCCCGCTCAAGTTTGCAACTA	LOC_Os06g27760
Os.57412.1.S1_at--164--779	1	NONE	GGTCCTGAGTGGTTTTAGCTATTTT	NONE
Os.57412.1.S1_at--510--687	1	Chr06:15719599..15719623 (25 bp)	GTATTCACCAGTCAATAGTGCGGAC	LOC_Os06g27760
Os.57412.1.S1_at--1091--521	1	Chr06:15719559..15719583 (25 bp)	GAATTTCGGACTGTGTACCTCAAAG	LOC_Os06g27760

Target Sequence

GCCCAAGGTGCCGTGTGGTGCTTCACCTTCTAACTTCTTTACCTACCTAGTGGGAGCCCGTTGTTGCCTGCTTCCTTTGG
ATGCAAGGGAATTATTCGCGAGTGGAAATAGAAATTGAATTAATGGTGATTAGTTTGTATGTGCATTCGATGCAAACAAG
GAGGGAGTTTGATTGATCTTAAAAGATCTGCTGTAGGCCGTTTCTATGTCTAATTCTTTCCGCATTTAAGAAATTTTAGA
AAATTACTAGACCGTAATTCGGGAGTGAAGCCCCTATTGCCCGCTCAAGTTTGCAACTAAGACATTTTTATAAGTTAGCT
ACATAGGTCCTGAGTGGTTTTAGCTATTTTCATTCAAACAGTTATATGTTACTCACAAGTGTATTCACCAGTCAATAGTG
CGGACATTCTTTATAGGTGTGAATTTCGGACTGTGTACCTCAAAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis