Browse Element(s) Details


OsAffx.25778.2.S1_at

Description gb:NM_193935.1
DB_XREF= gi:34914953
GEN=OSJNBa0091E23.18
TID=OsAffx.25778.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0091E23.18 (OSJNBa0091E23.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g286509/11hypothetical protein
LOC_Os06g277401/11retrotransposon protein, putative, unclassified
LOC_Os09g075401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28610OsAffx.11245.1.S1_at10/111+16331527..16333544hypothetical protein
LOC_Os01g28620OsAffx.23434.2.S1_x_at11/111+16334793..16346615hypothetical protein
LOC_Os01g28630Os.52782.1.S1_at1/111+16347093..16348389retrotransposon protein, putative, unclassified
LOC_Os01g28640OsAffx.8876.1.S1_at11/111+16351833..16352405retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28650OsAffx.25778.2.S1_at9/111+16357073..16357549hypothetical protein
LOC_Os01g28660OsAffx.29218.1.S1_s_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.380.1.S1_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.2057.3.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.13325.1.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28670NANA1+16368048..16369095hypothetical protein
LOC_Os01g28680Os.9116.1.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680OsAffx.21117.2.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_x_at10/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_at4/111+16373558..16383134LEC14B homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25778.2.S1_at--422--2171Chr01:16356959..16356983 (25 bp)
ACACCGGTGAACGACGTGGGAGAGA
NONE
OsAffx.25778.2.S1_at--841--2358Chr09:13844118..13844170 (25 bp)
AAAGCTCACTGAGGGACGGCCGGCA
NONE
OsAffx.25778.2.S1_at--819--4631Chr01:16357082..16357106 (25 bp)
GCGTTTCAGCGTTCCTCGATGAAGA
LOC_Os01g28650
OsAffx.25778.2.S1_at--151--5751Chr01:16357174..16357198 (25 bp)
GACGGATGACGACGAACGTGCGGCT
LOC_Os01g28650
OsAffx.25778.2.S1_at--278--2594Chr06:15708331..15708351 (21 bp)
AACGTGCGGCTGGAGGCACAGCGAC
LOC_Os06g27740
OsAffx.25778.2.S1_at--297--8312Chr01:16357241..16357265 (25 bp)
GGCTACCTCCGGTGGGATTTGGCAC
LOC_Os01g28650
OsAffx.25778.2.S1_at--440--4272Chr07:11410838..11410862 (25 bp)
CCTCCGGTGGGATTTGGCACAAAAT
NONE
OsAffx.25778.2.S1_at--457--212Chr07:11410849..11410943 (25 bp)
ATTTGGCACAAAATAACCAGCGGCT
NONE
OsAffx.25778.2.S1_at--239--331Chr01:16357269..16357293 (25 bp)
ATAACCAGCGGCTGGGATTTGCGGA
LOC_Os01g28650
OsAffx.25778.2.S1_at--103--10195Chr11:9890149..9890173 (25 bp)
TATAGCCATGGGAGCCCAGGATCGA
NONE
OsAffx.25778.2.S1_at--569--8092Chr11:9890159..9890182 (24 bp)
GGAGCCCAGGATCGAGCCCACATCG
NONE
Target Sequence 
ACACCGGTGAACGACGTGGGAGAGAGGAAAGCTCACTGAGGGACGGCCGGCAGCGAGGTAGAGGCGGTGACGGGGTCGGG
TCAGCGATGGCGGCGGCGTTTCAGCGTTCCTCGATGAAGAAAAACCAGTGGCCGGGCTTCACCTTGTTCCTGCGAACCCA
ATGGAGTCGACGGCGACCGAAGGCGACGACGGATGACGACGAACGTGCGGCTGGAGGCACAGCGACGACGGCGGCGCTCC
GGTTCACGACGACGGGCTACCTCCGGTGGGATTTGGCACAAAATAACCAGCGGCTGGGATTTGCGGAGCCAAGAGAGGTG
GCGGCGCAGAGCGGCGACGACCGAGGCGGCAGCGCACGGCGGCTGGAGCGGCTACCGGCGACGGAGAGAGAAGGCGCTCG
CGGGGAGAAGGTTTCCGGCGACGGCGGAGAGAGGGAGAGGTGGCGGCCGAAAGAGGAGCTGGAGGGGGCTCTATATATAG
CCATGGGAGCCCAGGATCGAGCCCACATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25778.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis