Browse Element(s) Details


OsAffx.29218.1.S1_s_at

Description tigr:9636.m01552
TID=OsAffx.29218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g154808/11hypothetical protein
LOC_Os11g369708/11Zinc finger, C3HC4 type family protein
LOC_Os01g220808/11hypothetical protein
LOC_Os08g022408/11retrotransposon protein, putative, unclassified
LOC_Os02g491008/11retrotransposon protein, putative, unclassified
LOC_Os02g572308/11retrotransposon protein, putative, unclassified
LOC_Os01g286602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15440OsAffx.29216.1.S1_at11/118+9385596..9387721hypothetical protein
LOC_Os08g15450OsAffx.29217.1.S1_at11/118+9393206..9395890Nodulin-like family protein
LOC_Os08g15460Os.15436.1.S1_at11/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.15436.1.S2_at10/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460OsAffx.10482.1.S1_x_at2/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.49078.2.S1_x_at1/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15480OsAffx.29218.1.S1_s_at8/118+9412386..9413252hypothetical protein
LOC_Os08g15480OsAffx.29576.2.S1_x_at1/118+9412386..9413252hypothetical protein
LOC_Os08g15490NANA8+9413986..9415007hypothetical protein
LOC_Os08g15500Os.14157.1.S1_at11/118+9418417..9422130expressed protein
LOC_Os08g15510OsAffx.29842.2.S1_x_at10/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.2.S1_at9/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_x_at5/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_at4/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.16831.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15520OsAffx.27865.1.S1_x_at1/118+9435832..9438044transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29218.1.S1_s_at--363--66511Chr11:21318707..21318731 (25 bp)
GTTGCATGCCGAAAGTTGGAGACCA
LOC_Os11g36970
OsAffx.29218.1.S1_s_at--1155--107112Chr11:21318708..21318732 (25 bp)
TTGCATGCCGAAAGTTGGAGACCAC
LOC_Os11g36970
OsAffx.29218.1.S1_s_at--1048--90112Chr11:21318709..21318733 (25 bp)
TGCATGCCGAAAGTTGGAGACCACG
LOC_Os11g36970
OsAffx.29218.1.S1_s_at--740--49712Chr11:21318710..21318734 (25 bp)
GCATGCCGAAAGTTGGAGACCACGG
LOC_Os11g36970
OsAffx.29218.1.S1_s_at--684--35312Chr11:21318711..21318735 (25 bp)
CATGCCGAAAGTTGGAGACCACGGT
LOC_Os11g36970
OsAffx.29218.1.S1_s_at--942--5913Chr11:21318712..21318736 (25 bp)
ATGCCGAAAGTTGGAGACCACGGTT
LOC_Os11g36970
OsAffx.29218.1.S1_s_at--199--91513Chr11:21318713..21318737 (25 bp)
TGCCGAAAGTTGGAGACCACGGTTA
LOC_Os11g36970
OsAffx.29218.1.S1_s_at--282--44312Chr11:21318714..21318738 (25 bp)
GCCGAAAGTTGGAGACCACGGTTAT
LOC_Os11g36970
Target Sequence 
GTTGCATGCCGAAAGTTGGAGACCACGGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29218.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis