Browse Element(s) Details


OsAffx.29842.3.S1_x_at

Description tigr:9637.m01140
TID=OsAffx.29842.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1404011/11transposon protein, putative, unclassified
LOC_Os08g155105/11transposon protein, putative, unclassified
LOC_Os05g397903/11transposon protein, putative, unclassified
LOC_Os08g148801/11transposon protein, putative, unclassified, expressed
LOC_Os01g166601/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14020OsAffx.17689.1.S1_at9/119+8280372..8282764hypothetical protein
LOC_Os09g14029NANA9+8296618..8296844NA
LOC_Os09g14040OsAffx.29842.3.S1_x_at11/119+8301097..8302830transposon protein, putative, unclassified
LOC_Os09g14040OsAffx.29842.3.S1_at11/119+8301097..8302830transposon protein, putative, unclassified
LOC_Os09g14040OsAffx.29842.2.S1_x_at1/119+8301097..8302830transposon protein, putative, unclassified
LOC_Os09g14050NANA9+8308107..8308487hypothetical protein
LOC_Os09g14060OsAffx.29844.1.S1_at1/119+8312344..8315031NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29842.3.S1_x_at--953--1231Chr09:8301635..8301659 (25 bp)
AGTTGGATGACGGACACCCTTTTGG
LOC_Os09g14040
OsAffx.29842.3.S1_x_at--679--5633Chr09:8301623..8301647 (25 bp)
GACACCCTTTTGGTTTGCTTGTAGG
LOC_Os09g14040
OsAffx.29842.3.S1_x_at--98--1433Chr08:8962208..8962232 (25 bp)
AGAAGACTACTGTTTTTGGTGCTGC
LOC_Os08g14880
OsAffx.29842.3.S1_x_at--282--4773Chr09:8301564..8301588 (25 bp)
GCTGCTCTTCTATATGATGAGACCG
LOC_Os09g14040
OsAffx.29842.3.S1_x_at--694--6732Chr09:8301429..8301453 (25 bp)
GTTCTTCCAGAAACTCATCATCGGA
LOC_Os09g14040
OsAffx.29842.3.S1_x_at--29--3573Chr09:8301414..8301438 (25 bp)
CATCATCGGATATGTGTATGGCACA
LOC_Os09g14040
OsAffx.29842.3.S1_x_at--775--391Chr09:8301386..8301410 (25 bp)
ATCAGAATGCCTGCAAGCACCTTAC
LOC_Os09g14040
OsAffx.29842.3.S1_x_at--453--4791Chr09:8301247..8301271 (25 bp)
GCTCCAGCAGAATACATGGTTGCAA
LOC_Os09g14040
OsAffx.29842.3.S1_x_at--212--5111Chr09:8301195..8301219 (25 bp)
GCACTAGTATATGGCCGGAACACGT
LOC_Os09g14040
OsAffx.29842.3.S1_x_at--72--5512Chr09:8301178..8301202 (25 bp)
GAACACGTTTTCTGCGGATACTAGT
LOC_Os09g14040
OsAffx.29842.3.S1_x_at--391--7951Chr09:8301163..8301187 (25 bp)
GGATACTAGTACCACCCGAAGAAAT
LOC_Os09g14040
Target Sequence 
AGTTGGATGACGGACACCCTTTTGGTTTGCTTGTAGGAGTGAATAATCATAAGAAGACTACTGTTTTTGGTGCTGCTCTT
CTATATGATGAGACCGCTAATAGTTTTGTTTGGTTATTTAATACTTTTCTAAATGTTATATCAGGAAAGAAGCCAAAAAC
AATTTTGCCAAATGAAGATGCAGCTATGGCTAAAGCAATTAAAATAGTTCTTCCAGAAACTCATCATCGGATATGTGTAT
GGCACATGAATCAGAATGCCTGCAAGCACCTTACTGGGTGTGTTAAGGACTATAAGAAATTTAATGCTGACTTTCAGAAC
TGCATATATGATCAGGAAGAAGAAGAAGAATTTTTACGTGCATGGGGCCAATTGCTTGAAAAATATGAGCTCCAGCAGAA
TACATGGTTGCAACGGATTTTTAAGAAAAGGGAGCAATGGGCACTAGTATATGGCCGGAACACGTTTTCTGCGGATACTA
GTACCACCCGAAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29842.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis