Browse Element(s) Details


OsAffx.29844.1.S1_at

Description tigr:9637.m01137
TID=OsAffx.29844.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1401011/11NB-ARC domain containing protein
LOC_Os09g140601/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13990Os.24831.4.S1_x_at1/119+8243988..8245259retrotransposon protein, putative, unclassified
LOC_Os09g14000NANA9+8246630..8247257retrotransposon protein, putative, unclassified
LOC_Os09g14010OsAffx.29844.1.S1_at11/119+8263589..8267015NB-ARC domain containing protein
LOC_Os09g14010Os.6160.1.S1_at1/119+8263589..8267015NB-ARC domain containing protein
LOC_Os09g14020OsAffx.17689.1.S1_at9/119+8280372..8282764hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29844.1.S1_at--578--10852Chr09:8312393..8312417 (25 bp)
TTGGGTGTCCATTGCTTCAGGAGTT
LOC_Os09g14060
OsAffx.29844.1.S1_at--493--1772Chr09:8312231..8312255 (25 bp)
ACCTGGAGACCTTTGAGCCAACATT
NONE
OsAffx.29844.1.S1_at--473--3031Chr09:8264228..8264252 (25 bp)
AATCCCTTCATCGTGTCCAATAGTT
LOC_Os09g14010
OsAffx.29844.1.S1_at--277--3111Chr09:8264210..8264234 (25 bp)
AATAGTTCTTTCTTTGCACGCCGGA
LOC_Os09g14010
OsAffx.29844.1.S1_at--427--6232Chr09:8312158..8312182 (25 bp)
GAGGCCAATGATGCGCACAGCCATA
NONE
OsAffx.29844.1.S1_at--1025--4431Chr09:8264168..8264192 (25 bp)
GCCATACAGTTCTCCTCATATATTT
LOC_Os09g14010
OsAffx.29844.1.S1_at--654--231Chr09:8264149..8264173 (25 bp)
ATATTTCCTTGCTTTTGGGCGGTCA
LOC_Os09g14010
OsAffx.29844.1.S1_at--31--6191Chr09:8263699..8263723 (25 bp)
GAGGCACATAGCTGTCGGAGGTACA
LOC_Os09g14010
OsAffx.29844.1.S1_at--685--2291Chr09:8263674..8263698 (25 bp)
AAATGGGAATTGCTTCGGTCATCAG
LOC_Os09g14010
OsAffx.29844.1.S1_at--260--1251Chr09:8263648..8263672 (25 bp)
AGTTGTTGCATCTTCCTGATTGGAT
LOC_Os09g14010
OsAffx.29844.1.S1_at--11--10131Chr09:8263623..8263647 (25 bp)
TATGTTTGCTTTGGTACTCTGCGTC
LOC_Os09g14010
Target Sequence 
TTGGGTGTCCATTGCTTCAGGAGTTNCCTCTCCAAGCAACACATGAAGGGATTACTCATCTAAAGCGGATANGAGGAGAG
GAGCAATGGTGGAGCAAACTACAGTGGGATTGCAATAAAACCTTTGATCATTACAAGGGATTCTTCAAAGTGTTTGACAA
GAACCTGGAGACCTTTGAGCCAACATTGGGTACCAATCCCTTCATCGTGTCCAATAGTTCTTTCTTTGCACGCCGGAGGC
CAATGATGCGCACAGCCATACAGTTCTCCTCATATATTTCCTTGCTTTTGGGCGGTCAAACATCAAACTATACAGGAGAA
ACAAGTGAGACGGGATCTAGGAACTTGGAGGCACATAGCTGTCGGAGGTACAAAATGGGAATTGCTTCGGTCATCAGGAG
TTGTTGCATCTTCCTGATTGGATTATGTTTGCTTTGGTACTCTGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis