Browse Element(s) Details


OsAffx.17689.1.S1_at

Description tigr:9637.m01139
TID=OsAffx.17689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g140209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14010OsAffx.29844.1.S1_at11/119+8263589..8267015NB-ARC domain containing protein
LOC_Os09g14010Os.6160.1.S1_at1/119+8263589..8267015NB-ARC domain containing protein
LOC_Os09g14020OsAffx.17689.1.S1_at9/119+8280372..8282764hypothetical protein
LOC_Os09g14029NANA9+8296618..8296844NA
LOC_Os09g14040OsAffx.29842.3.S1_x_at11/119+8301097..8302830transposon protein, putative, unclassified
LOC_Os09g14040OsAffx.29842.3.S1_at11/119+8301097..8302830transposon protein, putative, unclassified
LOC_Os09g14040OsAffx.29842.2.S1_x_at1/119+8301097..8302830transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17689.1.S1_at--604--6251Chr09:8280587..8280611 (25 bp)
GATGGGAGACGGTAGTACATGCATA
LOC_Os09g14020
OsAffx.17689.1.S1_at--725--5991Chr09:8280592..8280613 (22 bp)
GAGACGGTAGTACATGCATATGCTT
LOC_Os09g14020
OsAffx.17689.1.S1_at--22--6951NONE
GTAGTACATGCATATGCTTGGCGAA
NONE
OsAffx.17689.1.S1_at--283--3531NONE
CATGCATATGCTTGGCGAATTTGCC
NONE
OsAffx.17689.1.S1_at--577--10111Chr09:8281927..8281948 (22 bp)
TATGCTTGGCGAATTTGCCTAGGTC
LOC_Os09g14020
OsAffx.17689.1.S1_at--973--3591Chr09:8281928..8281952 (25 bp)
CTTGGCGAATTTGCCTAGGTCAGCT
LOC_Os09g14020
OsAffx.17689.1.S1_at--861--1011Chr09:8281944..8281968 (25 bp)
AGGTCAGCTGGCAAGAAGCTCTTCC
LOC_Os09g14020
OsAffx.17689.1.S1_at--550--8231Chr09:8281953..8281977 (25 bp)
GGCAAGAAGCTCTTCCTACTGCAGC
LOC_Os09g14020
OsAffx.17689.1.S1_at--207--1451Chr09:8281957..8281981 (25 bp)
AGAAGCTCTTCCTACTGCAGCTCAG
LOC_Os09g14020
OsAffx.17689.1.S1_at--98--4071Chr09:8282014..8282038 (25 bp)
CGAGGAAGACAGACGCCACCAGGCG
LOC_Os09g14020
OsAffx.17689.1.S1_at--986--2131Chr09:8282022..8282046 (25 bp)
ACAGACGCCACCAGGCGCTGGACAG
LOC_Os09g14020
Target Sequence 
GATGGGAGACGGTAGTACATGCATATGCTTGGCGAATTTGCCTAGGTCAGCTGGCAAGAAGCTCTTCCTACTGCAGCTCA
GCTCGGTCTTCCCCAAGGACAGCTGTAAACTGGCGAGGAAGACAGACGCCACCAGGCGCTGGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis