Browse Element(s) Details


Os.6160.1.S1_at

Description gb:AK069550.1
DB_XREF= gi:32979574
TID=Os.6160.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024B12, full insert sequence.
FL= gb:AK069550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0225011/11expressed protein
LOC_Os09g140101/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02230OsAffx.24063.1.S1_at11/112+708712..715746Cytochrome P450 51, putative, expressed
LOC_Os02g02240Os.4816.1.S1_at6/112+717857..719511expressed protein
LOC_Os02g02250Os.6160.1.S1_at11/112+726578..734044expressed protein
LOC_Os02g02260OsAffx.11864.1.S1_at11/112+738922..739370hypothetical protein
LOC_Os02g02270Os.4816.1.S1_at8/112+743352..745314expressed protein
LOC_Os02g02290Os.12135.1.S1_at11/112+748714..759273SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6160.1.S1_at--315--7751Chr02:733471..733495 (25 bp)
GGTGTAGGTGTTTAGCTTCCAAACT
LOC_Os02g02250
Os.6160.1.S1_at--740--3131Chr02:733503..733527 (25 bp)
AATTTTGAGTTTCCTGCTTACTGGC
LOC_Os02g02250
Os.6160.1.S1_at--646--4891Chr02:733518..733542 (25 bp)
GCTTACTGGCGTAGTATGCTTCATA
LOC_Os02g02250
Os.6160.1.S1_at--984--9751Chr02:733601..733625 (25 bp)
TAAGGACCCCTGACTGTTAGTTCTA
LOC_Os02g02250
Os.6160.1.S1_at--154--8051Chr02:733665..733689 (25 bp)
GGAGTTGTTCAGTCTTTTTGAGCTT
LOC_Os02g02250
Os.6160.1.S1_at--141--8731Chr02:733694..733718 (25 bp)
TGTAAAGTTGGTACCCGGCGTGCGT
LOC_Os02g02250
Os.6160.1.S1_at--428--2532Chr02:733822..733846 (25 bp)
AACCTGGATTACAGCCCTTGTTTGG
LOC_Os02g02250
Os.6160.1.S1_at--881--8791Chr02:733853..733877 (25 bp)
TGTTCTCTGTCGGTTGGTCTGCAAT
LOC_Os02g02250
Os.6160.1.S1_at--258--3031Chr02:733887..733911 (25 bp)
AATCCCCTTTCTTATTGTTGGCTAT
LOC_Os02g02250
Os.6160.1.S1_at--1083--8811Chr02:733902..733926 (25 bp)
TGTTGGCTATTTCTTGTCATGCTAC
LOC_Os02g02250
Os.6160.1.S1_at--19--9591Chr02:733913..733937 (25 bp)
TCTTGTCATGCTACCCTCATGGAAA
LOC_Os02g02250
Target Sequence 
GGTGTAGGTGTTTAGCTTCCAAACTTGGTTAGAATTTTGAGTTTCCTGCTTACTGGCGTAGTATGCTTCATATTTTTTTC
CTTTTTCTTGTNTTGAGGTTGGGCCAGGTGAGGTACCCCCCGCTCTCCAGTAAGGACCCCTGACTGTTAGTTCTATGCCA
GGAGAGTAGTTTTGGTGTGATGTGTTGGGACTTGGGAGTTGTTCAGTCTTTTTGAGCTTAACCTGTAAAGTTGGTACCCG
GCGTGCGTATGGATCGGAGCTGGTGAACAGAGAAGGAAGACGCGCACATTGGGGATGATTTTGGAGCGTGTTGACTGTTG
AGGACTGGTAGGTTGCTAGGGAAATCAGCNATAACCTGGATTACAGCCCTTGTTTGGGGGGTTTGTTCTCTGTCGGTTGG
TCTGCAATGTTTATTTTAATCCCCTTTCTTATTGTTGGCTATTTCTTGTCATGCTACCCTCATGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis