Browse Element(s) Details


OsAffx.11864.1.S1_at

Description tigr:9630.m00127
TID=OsAffx.11864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0226011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02230OsAffx.24063.1.S1_at11/112+708712..715746Cytochrome P450 51, putative, expressed
LOC_Os02g02240Os.4816.1.S1_at6/112+717857..719511expressed protein
LOC_Os02g02250Os.6160.1.S1_at11/112+726578..734044expressed protein
LOC_Os02g02260OsAffx.11864.1.S1_at11/112+738922..739370hypothetical protein
LOC_Os02g02270Os.4816.1.S1_at8/112+743352..745314expressed protein
LOC_Os02g02290Os.12135.1.S1_at11/112+748714..759273SNF2 family N-terminal domain containing protein, expressed
LOC_Os02g02310NANA2+763409..765023nodulin MtN21 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11864.1.S1_at--552--4531Chr02:739271..739295 (25 bp)
GCCCCAAGTGAGTCCGAGCAGGCGA
LOC_Os02g02260
OsAffx.11864.1.S1_at--105--2871Chr02:739266..739290 (25 bp)
AAGTGAGTCCGAGCAGGCGAGCACC
LOC_Os02g02260
OsAffx.11864.1.S1_at--797--8891Chr02:739265..739287 (23 bp)
TGAGTCCGAGCAGGCGAGCACCGTC
LOC_Os02g02260
OsAffx.11864.1.S1_at--617--5931Chr02:739194..739280 (25 bp)
GAGCAGGCGAGCACCGTCGAGGATG
LOC_Os02g02260
OsAffx.11864.1.S1_at--395--9271Chr02:739166..739190 (25 bp)
TCCTGAAGACAGAGAGCACGGCCGT
LOC_Os02g02260
OsAffx.11864.1.S1_at--121--1371Chr02:739154..739178 (25 bp)
AGAGCACGGCCGTCGTGAAAGCCAA
LOC_Os02g02260
OsAffx.11864.1.S1_at--1142--3291Chr02:739150..739174 (25 bp)
CACGGCCGTCGTGAAAGCCAAGGCG
LOC_Os02g02260
OsAffx.11864.1.S1_at--473--4691Chr02:739050..739074 (25 bp)
GCGGCGTTAGGTGGTGTCCGGGACG
LOC_Os02g02260
OsAffx.11864.1.S1_at--949--8091Chr02:738979..739003 (25 bp)
GGACGCTGGCGGTAAAGAACCGCCA
LOC_Os02g02260
OsAffx.11864.1.S1_at--100--4351Chr02:738957..738981 (25 bp)
CCAGGAGCTCCGTCGGGATGTCTCT
LOC_Os02g02260
OsAffx.11864.1.S1_at--346--1591Chr02:738952..738976 (25 bp)
AGCTCCGTCGGGATGTCTCTGTCGC
LOC_Os02g02260
Target Sequence 
GCCCCAAGTGAGTCCGAGCAGGCGAGCACCGTCGAGGATGGGGTCCTGAAGACAGAGAGCACGGCCGTCGTGAAAGCCAA
GGCGGCAGAGGTAGAGGAGCGCCGAGCGGAGCTGGTCGCGGACGCTGCAGGCGAGGGTCTGGGGGCATTTGACGACGACG
CGGCGTTAGGTGGTGTCCGGGACGGCGAGGTCGTCGGTGAGGAAGGCGAAGACCGGGCGGAGGTCGGCGCGGACGCTGGC
GGTAAAGAACCGCCAGGAGCTCCGTCGGGATGTCTCTGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis