Browse Element(s) Details


Os.4816.1.S1_at

Description gb:AK072590.1
DB_XREF= gi:32982613
TID=Os.4816.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131L22, full insert sequence.
FL= gb:AK072590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g022708/11expressed protein
LOC_Os02g022406/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02240Os.4816.1.S1_at6/112+717857..719511expressed protein
LOC_Os02g02250Os.6160.1.S1_at11/112+726578..734044expressed protein
LOC_Os02g02260OsAffx.11864.1.S1_at11/112+738922..739370hypothetical protein
LOC_Os02g02270Os.4816.1.S1_at8/112+743352..745314expressed protein
LOC_Os02g02290Os.12135.1.S1_at11/112+748714..759273SNF2 family N-terminal domain containing protein, expressed
LOC_Os02g02310NANA2+763409..765023nodulin MtN21 family protein, putative, expressed
LOC_Os02g02320Os.23156.1.S1_at11/112+767270..772120Serine carboxypeptidase III precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4816.1.S1_at--45--992Chr02:744649..744673 (25 bp)
AGGAGGCTGGTCACAGGTTTCCCCA
LOC_Os02g02270
Os.4816.1.S1_at--756--10652Chr02:744703..744727 (25 bp)
TTCCTGTCCAAGATCAATCGCTTGG
LOC_Os02g02270
Os.4816.1.S1_at--414--8852Chr02:744753..744777 (25 bp)
TGATCTGAGGAGTAAGACGCTGCAA
LOC_Os02g02270
Os.4816.1.S1_at--75--8191NONE
GGAAGTATTTCCTCTTCGAGCGCTA
NONE
Os.4816.1.S1_at--120--5892Chr02:719201..719225 (25 bp)
GAGCGCTACTACAACACCAGTGAGA
LOC_Os02g02240
Os.4816.1.S1_at--386--432Chr02:744851..745072 (25 bp)
ATCTTATCAAGGCTACAGGTGAGGC
LOC_Os02g02270
Os.4816.1.S1_at--973--3452Chr02:745063..745087 (25 bp)
CAGGTGAGGCAGGAACTCTTGTAAA
LOC_Os02g02270
Os.4816.1.S1_at--142--5251Chr02:745140..745164 (25 bp)
GAATCACGTAGGCTACCTGGGTTGA
LOC_Os02g02270
Os.4816.1.S1_at--375--7571Chr02:745190..745214 (25 bp)
GGGCGATTCATGAGCTACTTTCTGT
LOC_Os02g02270
Os.4816.1.S1_at--514--6291Chr02:745315..745339 (25 bp)
GATGATTGGCCTGAAATGGATGCTC
NONE
Os.4816.1.S1_at--22--6351NONE
GATGCTCAGGAATTTTGTTCAGTTA
NONE
Target Sequence 
AGGAGGCTGGTCACAGGTTTCCCCACNTTGGGTATGGATGGGNATGTCATTTCTTTCCTGTCCAAGATCAATCGCTTGGA
TGATAAGGGATGGGTTATCTCTGTTGATCTGAGGAGTAAGACGCTGCAAGGCGTGGCTGAGATTGATGAGAGGAAGTATT
TCCTCTTCGAGCGCTACTACAACACCAGTGAGATCTCCAAATATCTTATCAAGGCTACAGGTGAGGCAGGAACTCTTGTA
AAAACTGGGGTTAATAGTAGAGTCTCAAAAAAGAAGANGTAGGAATTAATTAATGAATCACGTAGGCTACCTGGGTTGAA
GAAATGAAACGAGCTGCAGAGACTGGGCGATTCATGAGCTACTTTCTGTAATGAGCTATTATCAGAGTTGTTCTGTNCAA
GACATGCTACTTTCTGTAATGGATTTGGTTTTCGNCTNTNTATCCNAAGTTAAACTGCTATCTTCCCNTGATGATTGGCC
TGAAATGGATGCTCAGGAATTTTGTTCAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis