Browse Element(s) Details


Os.49078.2.S1_x_at

Description gb:AK103813.1
DB_XREF= gi:32989022
TID=Os.49078.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147C01, full insert sequence.
FL= gb:AK103813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3379011/11Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os08g154601/11Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33780OsAffx.28731.1.S1_s_at11/117+20212332..20217007ABC transporter family protein, putative, expressed
LOC_Os07g33790Os.49078.1.S1_at11/117+20219383..20224230Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g33790Os.49078.2.S1_x_at11/117+20219383..20224230Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g33800OsAffx.16543.1.S1_at11/117+20227011..20228786hypothetical protein
LOC_Os07g33820NANA7+20238394..20239506transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g33830NANA7+20241507..20243199retrotransposon protein, putative, unclassified
LOC_Os07g33840NANA7+20243777..20245451retrotransposon protein, putative, unclassified
LOC_Os07g33850Os.53166.1.S1_at11/117+20247861..20251380small GTP-binding protein domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009306biological_processprotein secretion
GO:0009416biological_processresponse to light stimulus
GO:0016020cellular_componentmembrane
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49078.2.S1_x_at--45--9511Chr07:20221244..20221268 (25 bp)
TCTCGCGTCTATGTTGTCCATGTAA
LOC_Os07g33790
Os.49078.2.S1_x_at--133--4491Chr07:20221281..20221305 (25 bp)
GCCTGGCAGTTTTTGCTGCTGCAAA
LOC_Os07g33790
Os.49078.2.S1_x_at--965--6471Chr07:20221339..20221363 (25 bp)
GATAGCAACAGACTGGCTCTCTGCA
LOC_Os07g33790
Os.49078.2.S1_x_at--1151--8312Chr08:9403901..9403920 (20 bp)
GGCTCTCTGCAGTGTTAGATTCATC
LOC_Os08g15460
Os.49078.2.S1_x_at--426--3951Chr07:20221430..20221454 (25 bp)
CGGCAACATGTTTCTGATTCTGGCA
LOC_Os07g33790
Os.49078.2.S1_x_at--951--8271Chr07:20221451..20221475 (25 bp)
GGCATTCAGCATTCGTTGGTTTCAA
LOC_Os07g33790
Os.49078.2.S1_x_at--176--8551Chr07:20221498..20221522 (25 bp)
TGGAGGTCATTCAAGCTTTAGTTCT
LOC_Os07g33790
Os.49078.2.S1_x_at--886--3871Chr07:20221545..20221569 (25 bp)
CTGTATGGTTAGTTGCTCGTGCTGT
LOC_Os07g33790
Os.49078.2.S1_x_at--3--4691Chr07:20221595..20221619 (25 bp)
GCGGTATCTTTTTCTGCTGATCCAA
LOC_Os07g33790
Os.49078.2.S1_x_at--352--7871Chr07:20221723..20221747 (25 bp)
GGTTTCTGGCCTGGTACAATTTACT
LOC_Os07g33790
Os.49078.2.S1_x_at--227--6371Chr07:20221762..20221786 (25 bp)
GATCCACCCAGCTTTTGATATCTTG
LOC_Os07g33790
Target Sequence 
TCTCGCGTCTATGTTGTCCATGTAAACCCTGACTCTGGCCTGGCAGTTTTTGCTGCTGCAAAATCTTTGGGAATGATGAG
TACTGGCTATGCATGGATAGCAACAGACTGGCTCTCTGCAGTGTTAGATTCATCTGATCATATTAGCACTGACAGAATGG
AACTTACTCAGGGGGTTATTATGCTTCGGCAACATGTTTCTGATTCTGGCATTCAGCATTCGTTGGTTTCAAGATGGAAC
AATCTGACCAGGAATGGAGGTCATTCAAGCTTTAGTTCTTACAGTATGCGTACTTATGATTCTGTATGGTTAGTTGCTCG
TGCTGTTGAAGATTTTTTGAGTGAGGGGAATGCGGTATCTTTTTCTGCTGATCCAAATTTGCAAGATATAAAAGGAAGTA
ACCTTCAGTTAGATTCCCTCAGAAGTTTGAACAATGGAGAAAGATTACTGGAGAAAGTTTGGCACACAAATTTCACAGGG
GTTTCTGGCCTGGTACAATTTACTGCAGAACGAGATCTGATCCACCCAGCTTTTGATATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49078.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis