Browse Element(s) Details


OsAffx.28731.1.S1_s_at

Description tigr:9635.m03330
TID=OsAffx.28731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3378011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33770OsAffx.28730.1.S1_at11/117+20192607..20193284hypothetical protein
LOC_Os07g33780OsAffx.28731.1.S1_s_at11/117+20212332..20217007ABC transporter family protein, putative, expressed
LOC_Os07g33790Os.49078.1.S1_at11/117+20219383..20224230Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g33790Os.49078.2.S1_x_at11/117+20219383..20224230Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g33800OsAffx.16543.1.S1_at11/117+20227011..20228786hypothetical protein
LOC_Os07g33820NANA7+20238394..20239506transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g33830NANA7+20241507..20243199retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28731.1.S1_s_at--794--4451Chr07:20216315..20216339 (25 bp)
GCCTACTTCACATTGTTTAGCATGA
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--743--6811Chr07:20216329..20216353 (25 bp)
GTTTAGCATGATGCTGGTTGCGTGC
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--1065--631Chr07:20216366..20216390 (25 bp)
ATGCTTGCGGCCGTTCTTGTTTCAT
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--763--8411Chr07:20216374..20216398 (25 bp)
GGCCGTTCTTGTTTCATTTGTGCTC
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--450--10331Chr07:20216385..20216409 (25 bp)
TTTCATTTGTGCTCTCCTCGTGGAA
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--1047--7311Chr07:20216393..20216417 (25 bp)
GTGCTCTCCTCGTGGAACAATTTTG
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--866--4271Chr07:20216400..20216424 (25 bp)
CCTCGTGGAACAATTTTGCCGGATT
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--82--10271Chr07:20216414..20216438 (25 bp)
TTTGCCGGATTCATTATACCCCGTC
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--579--3871Chr07:20216532..20216556 (25 bp)
CTGATTCCTGTTTGGTGGAGATGGT
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--587--4271Chr07:20216538..20216562 (25 bp)
CCTGTTTGGTGGAGATGGTTCTATT
LOC_Os07g33780
OsAffx.28731.1.S1_s_at--965--1931Chr07:20216770..20216794 (25 bp)
ACGGCATCAAGTGCTTGAACTTCCA
LOC_Os07g33780
Target Sequence 
GCCTACTTCACATTGTTTAGCATGATGCTGGTTGCGTGCACTGCTTCGGAAATGCTTGCGGCCGTTCTTGTTTCATTTGT
GCTCTCCTCGTGGAACAATTTTGCCGGATTCATTATACCCCGTCCACTGATTCCTGTTTGGTGGAGATGGTTCTATTGGG
CCAACCCGGTCTCCTGGACCATCTATGGAGTGATTGCGTCGCAGTTTGCGGACAGCGACCGTGTTGTCACCGTTCCTGGC
CAATCTACCACCATGGTGGTGAAGGATTTCTTGGAGAAGAACATGGGCTTTAAGCACGACTTCCTCGGCTACGTTGTGCT
GGCTCATTTCGGCTACGTCATCATCTTCTTCTTCCTCTTTGGATACGGCATCAAGTGCTTGAACTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28731.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis