Browse Element(s) Details


OsAffx.28730.1.S1_at

Description tigr:9635.m03329
TID=OsAffx.28730.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3377011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33730Os.49914.2.S1_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_x_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.1.S1_at10/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33740OsAffx.5518.1.S1_at11/117+20172445..20175557NB-ARC domain containing protein, expressed
LOC_Os07g33750OsAffx.5519.1.S1_at11/117+20177127..20177573hypothetical protein
LOC_Os07g33760NANA7+20181532..20185102retrotransposon protein, putative, unclassified
LOC_Os07g33770OsAffx.28730.1.S1_at11/117+20192607..20193284hypothetical protein
LOC_Os07g33780OsAffx.28731.1.S1_s_at11/117+20212332..20217007ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28730.1.S1_at--467--5751Chr07:20193161..20193185 (25 bp)
GACGACTACGCCAGGTACGAGTCCG
LOC_Os07g33770
OsAffx.28730.1.S1_at--465--8331Chr07:20192857..20192881 (25 bp)
GGCTGCGTTCCGACGCCAGGAACAA
LOC_Os07g33770
OsAffx.28730.1.S1_at--461--5511Chr07:20192838..20192862 (25 bp)
GAACAAGGTCAGGATGGAGCTCGCC
LOC_Os07g33770
OsAffx.28730.1.S1_at--662--851Chr07:20192784..20192808 (25 bp)
AGGCGGAGAACTCTTCGACGACGAC
LOC_Os07g33770
OsAffx.28730.1.S1_at--1095--4591Chr07:20192740..20192764 (25 bp)
GCGACGGCGACGGAACAGCTGCATC
LOC_Os07g33770
OsAffx.28730.1.S1_at--756--2151Chr07:20192726..20192750 (25 bp)
ACAGCTGCATCGCAATGCAGGGATG
LOC_Os07g33770
OsAffx.28730.1.S1_at--311--4711Chr07:20192701..20192725 (25 bp)
GCGGCGCTTGTCAATCAGACGGTAT
LOC_Os07g33770
OsAffx.28730.1.S1_at--1045--3051Chr07:20192689..20192713 (25 bp)
AATCAGACGGTATGGCAGGCGAAAC
LOC_Os07g33770
OsAffx.28730.1.S1_at--556--851Chr07:20192678..20192702 (25 bp)
ATGGCAGGCGAAACAACCAAGGCTT
LOC_Os07g33770
OsAffx.28730.1.S1_at--456--2411Chr07:20192668..20192692 (25 bp)
AAACAACCAAGGCTTCGCTGACGCG
LOC_Os07g33770
OsAffx.28730.1.S1_at--978--2931Chr07:20192660..20192684 (25 bp)
AAGGCTTCGCTGACGCGGACGAACA
LOC_Os07g33770
Target Sequence 
GACGACTACGCCAGGTACGAGTCCGCGCTGCTGGCGCTGGACATCGTGGAGGCGCAGCTCCGCGCGCTCCCGCTCGGCGG
CGGCGGGCGCGGCGAGGGCGGCGACGACGACGACCCCGACGTGCGGGTGGCGCGGTTGGAGTGGAAGCTGCGGCTGGACG
GGGCGACGAACGAGCTGGAGGACCTCGTCGGGGAGATGGAGGCGGCCGTCGAGGCGGAGAAGAAGGCGGCGCGGTGGTGC
TGGGCGGCGCCGTGGCCGTGGCGGCGGCGGCGGTGCAGGGCGGCGGCGGAGGTGGTGACAGGGTGGCTGCGTTCCGACGC
CAGGAACAAGGTCAGGATGGAGCTCGCCGTCGGGAGGCTCGCCGGCGTGTACGTCCAAGGCGGAGAACTCTTCGACGACG
ACGACGAGGACGGCGTGGCCGGCGACGGCGACGGAACAGCTGCATCGCAATGCAGGGATGGCGGCGCTTGTCAATCAGAC
GGTATGGCAGGCGAAACAACCAAGGCTTCGCTGACGCGGACGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis