Browse Element(s) Details


OsAffx.5518.1.S1_at

Description tigr:9635.m03326
TID=OsAffx.5518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3374011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33710Os.54722.1.S1_at10/117+20147693..20151093expressed protein
LOC_Os07g33720OsAffx.16542.1.S1_at10/117+20156217..20160968NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_x_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.1.S1_at10/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33740OsAffx.5518.1.S1_at11/117+20172445..20175557NB-ARC domain containing protein, expressed
LOC_Os07g33750OsAffx.5519.1.S1_at11/117+20177127..20177573hypothetical protein
LOC_Os07g33760NANA7+20181532..20185102retrotransposon protein, putative, unclassified
LOC_Os07g33770OsAffx.28730.1.S1_at11/117+20192607..20193284hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5518.1.S1_at--938--3451Chr07:20174871..20174895 (25 bp)
CAGGGTATTTCCATCTCTTAAGGAG
LOC_Os07g33740
OsAffx.5518.1.S1_at--464--7771Chr07:20174895..20174919 (25 bp)
GGTGACATTTCTTGATATGCCAAAT
LOC_Os07g33740
OsAffx.5518.1.S1_at--1066--1251Chr07:20174952..20174976 (25 bp)
AGATTTGCAAATTCCTCCATTTCCA
LOC_Os07g33740
OsAffx.5518.1.S1_at--677--10671Chr07:20174963..20174987 (25 bp)
TTCCTCCATTTCCACAGCTTAGAAA
LOC_Os07g33740
OsAffx.5518.1.S1_at--710--6151Chr07:20175007..20175031 (25 bp)
GAGGTCTTAATTGACATGCCAGTAT
LOC_Os07g33740
OsAffx.5518.1.S1_at--780--971Chr07:20175053..20175077 (25 bp)
AGGAGCTTGAGATCTCTGGTTGTAA
LOC_Os07g33740
OsAffx.5518.1.S1_at--278--211Chr07:20175084..20175108 (25 bp)
ATTTGCCTGTAATCCAAGCTGTTTA
LOC_Os07g33740
OsAffx.5518.1.S1_at--532--1271Chr07:20175108..20175132 (25 bp)
AGATAGATTGACTTCCCTTGTGCGC
LOC_Os07g33740
OsAffx.5518.1.S1_at--416--9151Chr07:20175128..20175152 (25 bp)
TGCGCTTGAAGATCCACCATTGTTT
LOC_Os07g33740
OsAffx.5518.1.S1_at--905--9351Chr07:20175343..20175510 (25 bp)
TCTGAAGGGTATCACTACTTGTCTT
LOC_Os07g33740
OsAffx.5518.1.S1_at--1091--9871Chr07:20175501..20175525 (25 bp)
TACTTGTCTTCATGCTTTCTTAACA
LOC_Os07g33740
Target Sequence 
CAGGGTATTTCCATCTCTTAAGGAGGTGACATTTCTTGATATGCCAAATTGGAGGAAGTGGTCAGGCATAGAAGAACTAC
AAGATTTGCAAATTCCTCCATTTCCACAGCTTAGAAAGGTCCAAATCAAGAATTGTGAGGTCTTAATTGACATGCCAGTA
TGTTGTTTAAAAGCGTCACTTGAGGAGCTTGAGATCTCTGGTTGTAATGAAATATTTGCCTGTAATCCAAGCTGTTTAGA
TAGATTGACTTCCCTTGTGCGCTTGAAGATCCACCATTGTTTGGGCAAAATTTATCTTCCATGTCGATTGTTGGAGTCAA
TTGAAGTTTTGAATCTCCAAAGATGTGAAGTTTATTTCCAGGGAGGTAAAGAACATTTAATGAAATTGAGGAGGACTGTA
ACAAATGATGTTCATGAATTGAATTTGGATGAATCGAAAGCAATCAGTACAGAGCTGTTAGTTCTTAAACTTTCTGAAGG
GTATCACTACTTGTCTTCATGCTTTCTTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis