Browse Element(s) Details


OsAffx.5519.1.S1_at

Description tigr:9635.m03327
TID=OsAffx.5519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3375011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33720OsAffx.16542.1.S1_at10/117+20156217..20160968NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_x_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.1.S1_at10/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33740OsAffx.5518.1.S1_at11/117+20172445..20175557NB-ARC domain containing protein, expressed
LOC_Os07g33750OsAffx.5519.1.S1_at11/117+20177127..20177573hypothetical protein
LOC_Os07g33760NANA7+20181532..20185102retrotransposon protein, putative, unclassified
LOC_Os07g33770OsAffx.28730.1.S1_at11/117+20192607..20193284hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5519.1.S1_at--181--3131Chr07:20177171..20177195 (25 bp)
AATTCCAACAACATTCAACCCTGAC
LOC_Os07g33750
OsAffx.5519.1.S1_at--1064--111Chr07:20177183..20177207 (25 bp)
ATTCAACCCTGACCCACGAAGAAGG
LOC_Os07g33750
OsAffx.5519.1.S1_at--526--5371Chr07:20177200..20177224 (25 bp)
GAAGAAGGGTGCACTGGCGAAACAT
LOC_Os07g33750
OsAffx.5519.1.S1_at--1106--2251Chr07:20177234..20177258 (25 bp)
AAATAGCGTGGCGTACCTCAGCCTT
LOC_Os07g33750
OsAffx.5519.1.S1_at--1096--3671Chr07:20177256..20177280 (25 bp)
CTTTCGGCGTTCGTCATGTCAGGGA
LOC_Os07g33750
OsAffx.5519.1.S1_at--1065--3471Chr07:20177270..20177294 (25 bp)
CATGTCAGGGAGAGCCGTGGCCTCA
LOC_Os07g33750
OsAffx.5519.1.S1_at--527--7171Chr07:20177319..20177343 (25 bp)
GTCGGAGTCCAATTGACCGTCACGT
LOC_Os07g33750
OsAffx.5519.1.S1_at--1136--4011Chr07:20177336..20177360 (25 bp)
CGTCACGTCTGAGCATTCGGAATGG
LOC_Os07g33750
OsAffx.5519.1.S1_at--41--2971Chr07:20177356..20177380 (25 bp)
AATGGTCGATCCTCAGCCCACGCAA
LOC_Os07g33750
OsAffx.5519.1.S1_at--396--2371Chr07:20177380..20177404 (25 bp)
AAACCTGCCATCCAACAGGCAAGGT
LOC_Os07g33750
OsAffx.5519.1.S1_at--471--1791Chr07:20177486..20177510 (25 bp)
ACCGCAAGGAAGTGGAGCCGTGCCA
LOC_Os07g33750
Target Sequence 
AATTCCAACAACATTCAACCCTGACCCACGAAGAAGGGTGCACTGGCGAAACATGAGATGCGCAAATAGCGTGGCGTACC
TCAGCCTTTCGGCGTTCGTCATGTCAGGGAGAGCCGTGGCCTCAGCCGCCGCCACCGCCAGCCCGCCCGTCGGAGTCCAA
TTGACCGTCACGTCTGAGCATTCGGAATGGTCGATCCTCAGCCCACGCAAAACCTGCCATCCAACAGGCAAGGTTAAATG
GAAAGGGAGGCGAGAGCATTTCGTCGAGCGATTGGTGGGCACGGCTCACCTGCCGCGTCGGAGGCCGGAGAGGCAACCGC
AAGGAAGTGGAGCCGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis