Browse Element(s) Details


Os.49914.2.S1_x_at

Description gb:AK120069.1
DB_XREF= gi:37989692
TID=Os.49914.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013003D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013003D09, full insert sequence.
FL= gb:AK120069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3373011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33700Os.35344.3.S1_x_at10/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700Os.35344.18.S1_x_at9/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700OsAffx.22940.5.S1_x_at3/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33710Os.54722.1.S1_at10/117+20147693..20151093expressed protein
LOC_Os07g33720OsAffx.16542.1.S1_at10/117+20156217..20160968NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_x_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.1.S1_at10/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33740OsAffx.5518.1.S1_at11/117+20172445..20175557NB-ARC domain containing protein, expressed
LOC_Os07g33750OsAffx.5519.1.S1_at11/117+20177127..20177573hypothetical protein
LOC_Os07g33760NANA7+20181532..20185102retrotransposon protein, putative, unclassified
LOC_Os07g33770OsAffx.28730.1.S1_at11/117+20192607..20193284hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49914.2.S1_x_at--1039--7511Chr07:20164358..20164382 (25 bp)
GTGGAGAGTGCTACAGATCATCTGA
LOC_Os07g33730
Os.49914.2.S1_x_at--301--5371Chr07:20164232..20164256 (25 bp)
GAAGACTGGCCAAAGATTGCTCATA
LOC_Os07g33730
Os.49914.2.S1_x_at--205--4831Chr07:20164214..20164238 (25 bp)
GCTCATATTCCTTATATCCGTGTGA
LOC_Os07g33730
Os.49914.2.S1_x_at--256--491Chr07:20164165..20164189 (25 bp)
ATCTGTGAAACTTCAGCGTGCAGCT
LOC_Os07g33730
Os.49914.2.S1_x_at--1076--4651Chr07:20164150..20164174 (25 bp)
GCGTGCAGCTTTCCGAAATCTGTGT
LOC_Os07g33730
Os.49914.2.S1_x_at--963--2511Chr07:20164066..20164090 (25 bp)
AACTTCCTTTAATTTGCTCATGCTA
LOC_Os07g33730
Os.49914.2.S1_x_at--1070--4791Chr07:20164051..20164075 (25 bp)
GCTCATGCTACTGTAGTACTGCTTG
LOC_Os07g33730
Os.49914.2.S1_x_at--1109--6931Chr07:20164039..20164063 (25 bp)
GTAGTACTGCTTGATTCAGTCTTAT
LOC_Os07g33730
Os.49914.2.S1_x_at--127--6571Chr07:20164027..20164051 (25 bp)
GATTCAGTCTTATTCAATTTGTCAC
LOC_Os07g33730
Os.49914.2.S1_x_at--1016--10811Chr07:20163987..20164011 (25 bp)
TTGTCCCTCTTATTACTGCGGTAAA
LOC_Os07g33730
Os.49914.2.S1_x_at--492--4671Chr07:20163970..20163994 (25 bp)
GCGGTAAATCAAAGCAAACTATTCA
LOC_Os07g33730
Target Sequence 
GTGGAGAGTGCTACAGATCATCTGAACGATAAGGGAGAGTGGTTAGAGAATGAAGAAGAGGACTGGCTGAAGAATAATTC
AGATGAACTGGAAAATAATGAAGATGTGTGGCTCAAGAGTAGGNGNGAAGACTGGCCAAAGATTGCTCATATTCCTTATA
TCCGTGTGAATGGAGATATTATACAGAATTTTTATCTGTGAAACTTCAGCGTGCAGCTTTCCGAAATCTGTGTAAAGGTA
TTCTTGTGTAGAAGTGTTTGACCATTTTNTNTAGTACGTTNTCTTTCTTTTTAACTTCCTTTAATTTGCTCATGCTACTG
TAGTACTGCTTGATTCAGTCTTATTCAATTTGTCACTGACTACNTNTGTTGTTGTCCCTCTTATTACTGCGGTAAATCAA
AGCAAACTATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49914.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis