Browse Element(s) Details


OsAffx.16542.1.S1_at

Description tigr:9635.m03324
TID=OsAffx.16542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3372010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33690Os.57049.1.S1_at11/117+20127954..20133545NB-ARC domain containing protein, expressed
LOC_Os07g33700Os.35344.3.S1_x_at10/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700Os.35344.18.S1_x_at9/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700OsAffx.22940.5.S1_x_at3/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33710Os.54722.1.S1_at10/117+20147693..20151093expressed protein
LOC_Os07g33720OsAffx.16542.1.S1_at10/117+20156217..20160968NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_x_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.1.S1_at10/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33740OsAffx.5518.1.S1_at11/117+20172445..20175557NB-ARC domain containing protein, expressed
LOC_Os07g33750OsAffx.5519.1.S1_at11/117+20177127..20177573hypothetical protein
LOC_Os07g33760NANA7+20181532..20185102retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16542.1.S1_at--735--1971Chr07:20158655..20158679 (25 bp)
ACTGACGTTCCGTGACATGGAAAAT
LOC_Os07g33720
OsAffx.16542.1.S1_at--1021--8011NONE
GGAGGATCCCACGAACTGGTAGAAT
NONE
OsAffx.16542.1.S1_at--1055--6591Chr07:20158879..20158903 (25 bp)
GATTGATCTCCCAAACCATTTGTTG
LOC_Os07g33720
OsAffx.16542.1.S1_at--262--8811Chr07:20158899..20159244 (25 bp)
TGTTGGCGTCAACCGAGTTTTTAAG
LOC_Os07g33720
OsAffx.16542.1.S1_at--976--9571Chr07:20159307..20159331 (25 bp)
TCATTTTCACCCCAACTAGTTCGGG
LOC_Os07g33720
OsAffx.16542.1.S1_at--888--191Chr07:20160686..20160710 (25 bp)
ATTTCGTCGAGCAAGTGGCGAGCAC
LOC_Os07g33720
OsAffx.16542.1.S1_at--1016--5931Chr07:20160705..20160729 (25 bp)
GAGCACCACTCACCTGGGCAAAGAG
LOC_Os07g33720
OsAffx.16542.1.S1_at--566--1351Chr07:20160726..20160750 (25 bp)
AGAGACGGCCCGCAGAAGCAACCAG
LOC_Os07g33720
OsAffx.16542.1.S1_at--143--9431Chr07:20160800..20160824 (25 bp)
TCGTGAACGCCGACACGGTTCAGGA
LOC_Os07g33720
OsAffx.16542.1.S1_at--65--3331Chr07:20160813..20160837 (25 bp)
CACGGTTCAGGAGCCCGTAGAGGTA
LOC_Os07g33720
OsAffx.16542.1.S1_at--1034--4651Chr07:20160872..20160896 (25 bp)
GCGTGTCCTCACTCGGGACTCGGGA
LOC_Os07g33720
Target Sequence 
ACTGACGTTCCGTGACATGGAAAATTGGAGGAGGATCCCACGAACTGGTAGAATTGTAAGAACAGAAGAAGCCGAGGAGG
AAAACATGACATGTTTAAAAGTTCATGATTGTTTGGCAATCATGATTGATCTCCCAAACCATTTGTTGGCGTCAACCGAG
TTTTTAAGACAATTAGTGGTCTATGAGGAATGCAAAAAAGGTTTCAAAGCTATCGACTACCCCCTTGGCTTCATTTTCAC
CCCAACTAGTTCGGGCCCACACCTCACCCACCCCAAGGAGGCAAACAAAGCGAAGAGCGGAGTCAGGGAGAAGTGCGCAT
TTCGTCGAGCAAGTGGCGAGCACCACTCACCTGGGCAAAGAGACGGCCCGCAGAAGCAACCAGCGGAGGAGAGGAGGGGG
AGCTCGCCTGCATCACCTAGGCACCGCCTGCCTCGTGAACGCCGACACGGTTCAGGAGCCCGTAGAGGTAGAGGTAGAGC
GGCTAGGGCCATCGGCCTCCGCCGGCGTGTCCTCACTCGGGACTCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis