Browse Element(s) Details


OsAffx.16543.1.S1_at

Description tigr:9635.m03332
TID=OsAffx.16543.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3380011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33780OsAffx.28731.1.S1_s_at11/117+20212332..20217007ABC transporter family protein, putative, expressed
LOC_Os07g33790Os.49078.1.S1_at11/117+20219383..20224230Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g33790Os.49078.2.S1_x_at11/117+20219383..20224230Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g33800OsAffx.16543.1.S1_at11/117+20227011..20228786hypothetical protein
LOC_Os07g33820NANA7+20238394..20239506transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g33830NANA7+20241507..20243199retrotransposon protein, putative, unclassified
LOC_Os07g33840NANA7+20243777..20245451retrotransposon protein, putative, unclassified
LOC_Os07g33850Os.53166.1.S1_at11/117+20247861..20251380small GTP-binding protein domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16543.1.S1_at--426--911Chr07:20228703..20228727 (25 bp)
AGGCGGCAATTGTTGTTGCGGTCAT
LOC_Os07g33800
OsAffx.16543.1.S1_at--486--10711Chr07:20228688..20228712 (25 bp)
TTGCGGTCATGTGGTGGTGTCACTC
LOC_Os07g33800
OsAffx.16543.1.S1_at--183--8631Chr07:20228677..20228701 (25 bp)
TGGTGGTGTCACTCTTGGGCTATTG
LOC_Os07g33800
OsAffx.16543.1.S1_at--734--10831Chr07:20228663..20228687 (25 bp)
TTGGGCTATTGTGGCCTGCAGCTGC
LOC_Os07g33800
OsAffx.16543.1.S1_at--1025--5131Chr07:20228627..20228651 (25 bp)
GCAAAAGGCAGGCATCTCGTGAGCT
LOC_Os07g33800
OsAffx.16543.1.S1_at--681--3551Chr07:20228615..20228639 (25 bp)
CATCTCGTGAGCTGTGGAGTCTGGA
LOC_Os07g33800
OsAffx.16543.1.S1_at--537--1151Chr07:20228598..20228622 (25 bp)
AGTCTGGAGATGGTCGCGCATGCAT
LOC_Os07g33800
OsAffx.16543.1.S1_at--994--7231Chr07:20228586..20228610 (25 bp)
GTCGCGCATGCATACGGACGGAGAA
LOC_Os07g33800
OsAffx.16543.1.S1_at--204--4031Chr07:20228528..20228552 (25 bp)
CGTCAGTGGCAAATTGGCAGCTGCT
LOC_Os07g33800
OsAffx.16543.1.S1_at--1017--8251Chr07:20228513..20228537 (25 bp)
GGCAGCTGCTGCATGCTAAAGTTGC
LOC_Os07g33800
OsAffx.16543.1.S1_at--532--9271Chr07:20228487..20228509 (23 bp)
TCCTGTTCTAGTGTGGTTCTGGTGC
LOC_Os07g33800
Target Sequence 
AGGCGGCAATTGTTGTTGCGGTCATGTGGTGGTGTCACTCTTGGGCTATTGTGGCCTGCAGCTGCAGCTGCAGGGAGCAA
AAGGCAGGCATCTCGTGAGCTGTGGAGTCTGGAGATGGTCGCGCATGCATACGGACGGAGAAGTGGTACACGGGGAAAAA
GATGGACGGGAGAGGCGTCAGTGGCAAATTGGCAGCTGCTGCATGCTAAAGTTGCTAATCCTGTTCTAGTGTGGTTCTGG
TGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis