Browse Element(s) Details


Os.53166.1.S1_at

Description gb:AK071154.1
DB_XREF= gi:32981177
TID=Os.53166.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023076O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076O15, full insert sequence.
FL= gb:AK071154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3385011/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33790Os.49078.1.S1_at11/117+20219383..20224230Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g33790Os.49078.2.S1_x_at11/117+20219383..20224230Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g33800OsAffx.16543.1.S1_at11/117+20227011..20228786hypothetical protein
LOC_Os07g33820NANA7+20238394..20239506transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g33830NANA7+20241507..20243199retrotransposon protein, putative, unclassified
LOC_Os07g33840NANA7+20243777..20245451retrotransposon protein, putative, unclassified
LOC_Os07g33850Os.53166.1.S1_at11/117+20247861..20251380small GTP-binding protein domain containing protein, expressed
LOC_Os07g33860Os.22631.2.S1_s_at10/117+20255787..2025675760S ribosomal protein L44, putative, expressed
LOC_Os07g33860Os.47703.1.S1_at6/117+20255787..2025675760S ribosomal protein L44, putative, expressed
LOC_Os07g33870Os.22631.2.S1_s_at10/117+20259520..2026118960S ribosomal protein L44, putative, expressed
LOC_Os07g33880Os.22631.2.S1_s_at9/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33880Os.47703.1.S1_at6/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33889OsAffx.28733.1.S1_at10/117+20268829..20269831hypothetical protein
LOC_Os07g33898Os.22631.2.S1_s_at11/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33898Os.47703.1.S1_at1/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33910Os.47946.1.S1_s_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33910Os.47946.1.S1_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53166.1.S1_at--106--8091Chr07:20248779..20248803 (25 bp)
GGAGCTCGAATTGCCTTCAGCATTT
LOC_Os07g33850
Os.53166.1.S1_at--16--8351Chr07:20248953..20248975 (23 bp)
TGGCAGGAGACAGCCAGTTCCTCGA
LOC_Os07g33850
Os.53166.1.S1_at--131--1831Chr07:20248999..20249023 (25 bp)
ACGCCGTGGCGATCTTGTACATGTT
LOC_Os07g33850
Os.53166.1.S1_at--1075--7011Chr07:20249015..20249039 (25 bp)
GTACATGTTCGATCTCACGAGCCGG
LOC_Os07g33850
Os.53166.1.S1_at--807--4471Chr07:20249035..20249174 (25 bp)
GCCGGTGCACGCTTACTAATGTTAT
LOC_Os07g33850
Os.53166.1.S1_at--289--2771Chr07:20249531..20249554 (24 bp)
AAGACGGCTATTCCAATCCTAATTG
LOC_Os07g33850
Os.53166.1.S1_at--762--2831Chr07:20249560..20249584 (25 bp)
AAGTTTGATGACTTCGCTCAGCTTC
LOC_Os07g33850
Os.53166.1.S1_at--407--4831Chr07:20249575..20249599 (25 bp)
GCTCAGCTTCCTCTTGAGATGCAAT
LOC_Os07g33850
Os.53166.1.S1_at--471--1271Chr07:20250924..20250948 (25 bp)
AGATCTTCAAGTTCATCACGGCCAA
LOC_Os07g33850
Os.53166.1.S1_at--49--8391Chr07:20250992..20251016 (25 bp)
GGCGAGCCCATCATAGACTTCTGAA
LOC_Os07g33850
Os.53166.1.S1_at--1031--1391Chr07:20251006..20251030 (25 bp)
AGACTTCTGAAGACTCTACACCCTT
LOC_Os07g33850
Target Sequence 
GGAGCTCGAATTGCCTTCAGCATTTGGGATGTGGCAGGAGACAGCCAGTTCCTCGACCACGTCCCGATCGCGTGTAAGGA
CGCCGTGGCGATCTTGTACATGTTCGATCTCACGAGCCGGTGCACGCTTACTAATGTTATAGATTGGTATGAGAGGGCAA
GGAAATGGAATAAGACGGCTATTCCAATCCTAATTGGGACGAAGTTTGATGACTTCGCTCAGCTTCCTCTTGAGATGCAA
TGGACCATCGTTAACGAGGCCAGGGNATACGCGAGNAGCGATGAAGGCGACCCTCTTCTTCTCCAGCTCGACGCACAACA
TCAACGTGNACAAGATCTTCAAGTTCATCACGGCCAAGCTCTTCAACCTGCCGTGGACGGTGGAGCGCAACCTCACCGTC
GGCGAGCCCATCATAGACTTCTGAAGACTCTACACCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis