Browse Element(s) Details


Os.22631.2.S1_s_at

Description gb:AK069083.1
DB_XREF= gi:32979107
TID=Os.22631.2
CNT=90
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.22631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor (P0594D10.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009C02, full insert sequence.
FL= gb:AK058830.1 gb:AK058924.1 gb:AK069083.1 gb:AK060727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3389811/1160S ribosomal protein L44, putative, expressed
LOC_Os07g3399711/1160S ribosomal protein L44, putative, expressed
LOC_Os07g3394310/1160S ribosomal protein L44, putative
LOC_Os07g3387010/1160S ribosomal protein L44, putative, expressed
LOC_Os07g3386010/1160S ribosomal protein L44, putative, expressed
LOC_Os07g338809/1160S ribosomal protein L44, putative, expressed
LOC_Os07g339799/1160S ribosomal protein L44, putative, expressed
LOC_Os07g339219/1160S ribosomal protein L44, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33850Os.53166.1.S1_at11/117+20247861..20251380small GTP-binding protein domain containing protein, expressed
LOC_Os07g33860Os.22631.2.S1_s_at10/117+20255787..2025675760S ribosomal protein L44, putative, expressed
LOC_Os07g33860Os.47703.1.S1_at6/117+20255787..2025675760S ribosomal protein L44, putative, expressed
LOC_Os07g33870Os.22631.2.S1_s_at10/117+20259520..2026118960S ribosomal protein L44, putative, expressed
LOC_Os07g33880Os.22631.2.S1_s_at9/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33880Os.47703.1.S1_at6/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33889OsAffx.28733.1.S1_at10/117+20268829..20269831hypothetical protein
LOC_Os07g33898Os.22631.2.S1_s_at11/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33898Os.47703.1.S1_at1/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33910Os.47946.1.S1_s_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33910Os.47946.1.S1_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33921Os.22631.2.S1_s_at9/117+20284350..2028579760S ribosomal protein L44, putative
LOC_Os07g33932OsAffx.28733.1.S1_at10/117+20287046..20288048hypothetical protein
LOC_Os07g33943Os.22631.2.S1_s_at10/117+20291109..2029195660S ribosomal protein L44, putative
LOC_Os07g33954Os.47946.1.S1_s_at11/117+20293922..20296294Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33954Os.47946.1.S1_at11/117+20293922..20296294Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33970NANA7+20296774..2029744660S ribosomal protein L44, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22631.2.S1_s_at--1073--9293Chr07:20308404..20308423 (20 bp)
TCCGCGGCCGCCAAAATGGTGAACG
LOC_Os07g33997
Os.22631.2.S1_s_at--1152--2958Chr07:20309572..20309593 (22 bp)
AATGGTGAACGTTCCCAAGACCAAG
LOC_Os07g33997
Os.22631.2.S1_s_at--1105--2758Chr07:20309585..20309609 (25 bp)
AAGACCAAGAAGACCTACTGCAAGA
LOC_Os07g33997
Os.22631.2.S1_s_at--1026--1378Chr07:20309595..20309619 (25 bp)
AGACCTACTGCAAGAACAAGGAGTG
LOC_Os07g33997
Os.22631.2.S1_s_at--706--978Chr07:20309613..20309637 (25 bp)
AGGAGTGCAGGAAGCACACCCTTCA
LOC_Os07g33997
Os.22631.2.S1_s_at--338--958Chr07:20309621..20309645 (25 bp)
AGGAAGCACACCCTTCACAAGGTCA
LOC_Os07g33997
Os.22631.2.S1_s_at--278--4198Chr07:20309631..20309655 (25 bp)
CCCTTCACAAGGTCACTCAGTACAA
LOC_Os07g33997
Os.22631.2.S1_s_at--635--1018Chr07:20309640..20309664 (25 bp)
AGGTCACTCAGTACAAGAAGGGTAA
LOC_Os07g33997
Os.22631.2.S1_s_at--1053--998Chr07:20309658..20309682 (25 bp)
AGGGTAAGGACAGCCTGTCTGCCCA
LOC_Os07g33997
Os.22631.2.S1_s_at--1117--8118Chr07:20309665..20309689 (25 bp)
GGACAGCCTGTCTGCCCAGGGAAAG
LOC_Os07g33997
Os.22631.2.S1_s_at--850--5555Chr07:20309685..20309709 (25 bp)
GAAAGCGCCGTTATGACCGTAAGCA
LOC_Os07g33997
Target Sequence 
TCCGCGGCCGCCAAAATGGTGAACGTTCCCAAGACCAAGAAGACCTACTGCAAGAACAAGGAGTGCAGGAAGCACACCCT
TCACAAGGTCACTCAGTACAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22631.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis