Browse Element(s) Details


OsAffx.28733.1.S1_at

Description tigr:9635.m03347
TID=OsAffx.28733.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3393210/11hypothetical protein
LOC_Os07g3388910/11hypothetical protein
LOC_Os07g3398810/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33880Os.22631.2.S1_s_at9/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33880Os.47703.1.S1_at6/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33889OsAffx.28733.1.S1_at10/117+20268829..20269831hypothetical protein
LOC_Os07g33898Os.22631.2.S1_s_at11/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33898Os.47703.1.S1_at1/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33910Os.47946.1.S1_s_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33910Os.47946.1.S1_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33921Os.22631.2.S1_s_at9/117+20284350..2028579760S ribosomal protein L44, putative
LOC_Os07g33932OsAffx.28733.1.S1_at10/117+20287046..20288048hypothetical protein
LOC_Os07g33943Os.22631.2.S1_s_at10/117+20291109..2029195660S ribosomal protein L44, putative
LOC_Os07g33954Os.47946.1.S1_s_at11/117+20293922..20296294Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33954Os.47946.1.S1_at11/117+20293922..20296294Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33970NANA7+20296774..2029744660S ribosomal protein L44, putative, expressed
LOC_Os07g33979Os.22631.2.S1_s_at9/117+20302520..2030419860S ribosomal protein L44, putative, expressed
LOC_Os07g33979Os.47703.1.S1_at6/117+20302520..2030419860S ribosomal protein L44, putative, expressed
LOC_Os07g33988OsAffx.28733.1.S1_at10/117+20305265..20306267hypothetical protein
LOC_Os07g33997Os.22631.2.S1_s_at11/117+20308348..2031035560S ribosomal protein L44, putative, expressed
LOC_Os07g33997Os.47703.1.S1_at1/117+20308348..2031035560S ribosomal protein L44, putative, expressed
LOC_Os07g34006Os.47946.1.S1_at11/117+20312386..20314379Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative
LOC_Os07g34006Os.47946.1.S1_s_at6/117+20312386..20314379Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28733.1.S1_at--439--533Chr07:20306202..20306226 (25 bp)
ATCGCTCTCAGTCCTGAATCATGTA
LOC_Os07g33988
OsAffx.28733.1.S1_at--214--2853Chr07:20306140..20306164 (25 bp)
AAGTGAAGCGATCTGACTCCGTTCC
LOC_Os07g33988
OsAffx.28733.1.S1_at--883--3793Chr07:20306098..20306122 (25 bp)
CTCGCGTCGCGTTGCAAACGGTAAA
LOC_Os07g33988
OsAffx.28733.1.S1_at--493--9833Chr07:20306077..20306101 (25 bp)
TAAACGGCGGCAAACCGCAACGCAA
LOC_Os07g33988
OsAffx.28733.1.S1_at--72--5153Chr07:20306056..20306080 (25 bp)
GCAAACACGGCAATCGGCAGCAAAT
LOC_Os07g33988
OsAffx.28733.1.S1_at--831--2273Chr07:20306035..20306059 (25 bp)
AAATCGCAGCGGCTCTGCATGACTG
LOC_Os07g33988
OsAffx.28733.1.S1_at--618--9053Chr07:20306020..20306044 (25 bp)
TGCATGACTGGCTGACTACGTCGAT
LOC_Os07g33988
OsAffx.28733.1.S1_at--405--1993Chr07:20306006..20306030 (25 bp)
ACTACGTCGATTGGAGGCCAACCGC
LOC_Os07g33988
OsAffx.28733.1.S1_at--710--5013Chr07:20305854..20305963 (25 bp)
GCAGTCGTCGTCTAAGCACAACATT
LOC_Os07g33988
OsAffx.28733.1.S1_at--220--10211NONE
TTTGAAAGTGCCAAGGGCCTCCACA
NONE
OsAffx.28733.1.S1_at--80--10053Chr07:20305304..20305328 (25 bp)
TAGATGGTGCAGCACAACACCGCCG
LOC_Os07g33988
Target Sequence 
ATCGCTCTCAGTCCTGAATCATGTATGGTATCGAAGACAGAAGACGAAGAGGAGCGAAGGAAAAGTGAAGCGATCTGACT
CCGTTCCCGTCGCCTCGATCACGCCTCGCGTCGCGTTGCAAACGGTAAACGGCGGCAAACCGCAACGCAAACACGGCAAT
CGGCAGCAAATCGCAGCGGCTCTGCATGACTGGCTGACTACGTCGATTGGAGGCCAACCGCCCGGCGGCGCGCCCTCATC
GGCCGATCGGCTGCTCGCGCCTCGCAGTCGTCGTCTAAGCACAACATTAATCATATTGTCAAGAAAATATGTATCCGGTA
GCGAAAAAAGAAAACGGAAAAAATGTTCGGATGATTTCATTGAAATTTTAGAAGAAACTTTTGAAAGTGCCAAGGGCCTC
CACACCTCGGGGAGGCTGGAAACTGAGAAGGTGGTGATGCGGCCAGCGAAGGGAAGAAGGGAAACTAGATGGTGCAGCAC
AACACCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis