Browse Element(s) Details


Os.47946.1.S1_s_at

Description gb:AK070124.1
DB_XREF= gi:32980148
TID=Os.47946.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045C15, full insert sequence.
FL= gb:AK070124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3391011/11Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g3395411/11Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g340066/11Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33850Os.53166.1.S1_at11/117+20247861..20251380small GTP-binding protein domain containing protein, expressed
LOC_Os07g33860Os.22631.2.S1_s_at10/117+20255787..2025675760S ribosomal protein L44, putative, expressed
LOC_Os07g33860Os.47703.1.S1_at6/117+20255787..2025675760S ribosomal protein L44, putative, expressed
LOC_Os07g33870Os.22631.2.S1_s_at10/117+20259520..2026118960S ribosomal protein L44, putative, expressed
LOC_Os07g33880Os.22631.2.S1_s_at9/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33880Os.47703.1.S1_at6/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33889OsAffx.28733.1.S1_at10/117+20268829..20269831hypothetical protein
LOC_Os07g33898Os.22631.2.S1_s_at11/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33898Os.47703.1.S1_at1/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33910Os.47946.1.S1_s_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33910Os.47946.1.S1_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33921Os.22631.2.S1_s_at9/117+20284350..2028579760S ribosomal protein L44, putative
LOC_Os07g33932OsAffx.28733.1.S1_at10/117+20287046..20288048hypothetical protein
LOC_Os07g33943Os.22631.2.S1_s_at10/117+20291109..2029195660S ribosomal protein L44, putative
LOC_Os07g33954Os.47946.1.S1_s_at11/117+20293922..20296294Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33954Os.47946.1.S1_at11/117+20293922..20296294Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33970NANA7+20296774..2029744660S ribosomal protein L44, putative, expressed
LOC_Os07g33979Os.22631.2.S1_s_at9/117+20302520..2030419860S ribosomal protein L44, putative, expressed
LOC_Os07g33979Os.47703.1.S1_at6/117+20302520..2030419860S ribosomal protein L44, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0005355molecular_functionglucose transporter activity
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47946.1.S1_s_at--559--7473Chr07:20312677..20312701 (25 bp)
GTGTGTTCTACCACTTGTACAACCA
LOC_Os07g34006
Os.47946.1.S1_s_at--452--10873Chr07:20312636..20312660 (25 bp)
TTGGACGAGATCTCACCACTGACAT
LOC_Os07g34006
Os.47946.1.S1_s_at--157--8953Chr07:20312617..20312641 (25 bp)
TGACATTCAGCATCGGCAACACCAT
LOC_Os07g34006
Os.47946.1.S1_s_at--1130--653Chr07:20312594..20312618 (25 bp)
ATGAAGCGGATCTCCGTCATTGTCG
LOC_Os07g34006
Os.47946.1.S1_s_at--1057--4433Chr07:20312516..20312540 (25 bp)
GCCATTGCGATTCTCGGAACTTTCA
LOC_Os07g34006
Os.47946.1.S1_s_at--305--2533Chr07:20312392..20312523 (25 bp)
AACTTTCATCTACTCTCAGGCGAAG
LOC_Os07g34006
Os.47946.1.S1_s_at--353--9793Chr07:20312356..20312380 (25 bp)
TAAGCATGGAAATGGCACCCGTTTT
NONE
Os.47946.1.S1_s_at--26--4593Chr07:20312320..20312344 (25 bp)
GCGACTCGGTGCTCGGGATGTAACA
NONE
Os.47946.1.S1_s_at--496--10313Chr07:20312230..20312254 (25 bp)
TTTCTCTAGGTGTAGCTGCCAATGT
NONE
Os.47946.1.S1_s_at--523--4393Chr07:20312213..20312237 (25 bp)
GCCAATGTTTCTTCTGAATTCGTCG
NONE
Os.47946.1.S1_s_at--544--4013Chr07:20312193..20312217 (25 bp)
CGTCGAGTTCTTGTACTATGACTAT
NONE
Target Sequence 
GTGTGTTCTACCACTTGTACAACCAAGTGTCCTACATGTCATTGGACGAGATCTCACCACTGACATTCAGCATCGGCAAC
ACCATGAAGCGGATCTCCGTCATTGTCGCCTCCATCATCATCTTCCACACGCCGGTCCAGCCCATCAACGCCCTCGGAGC
CGCCATTGCGATTCTCGGAACTTTCATCTACTCTCAGGCGAAGCAGTAATGGCATAAGCATGGAAATGGCACCCGTTTTC
GCCACAAGTCGCGACTCGGTGCTCGGGATGTAACAATGCTATGAGCATATATCCAAGGATCCCTTGTAATATATTAGATC
TTCTTTTCTTTTCATTTTTCTTTCTCTAGGTGTAGCTGCCAATGTTTCTTCTGAATTCGTCGAGTTCTTGTACTATGACT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47946.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis